Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I02
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467...    27   2.9  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    26   6.7  
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    26   6.7  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    26   6.7  
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    26   6.7  

>03_03_0149 +
           14843880-14844145,14846501-14846561,14846608-14846720,
           14848448-14848540,14849578-14849793,14853773-14856023
          Length = 999

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 214 LSNNYLQLGRAKFTPRWNAAPSRYPVTF 297
           L+  Y+ +G  ++ PRW     RY VTF
Sbjct: 166 LAYKYITMGIPQWFPRWAQPSMRYVVTF 193


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  VSRSPNLPKEPRSPRSNSLSRVAHVSPFKFPN 108
           V+ S +L K    P+SNS S  + VS  K P+
Sbjct: 339 VASSQSLTKSKADPQSNSFSSSSTVSSTKLPS 370


>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 194 FSVNSLNCRIIIYNSVELSLHLAGMRHLPATRSP 295
           +S  S NC I  + S +L+  L G  + P  RSP
Sbjct: 17  WSWKSCNCGIQSHASFDLAYSLRGSTYSPTCRSP 50


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  VSRSPNLPKEPRSPRSNSLSRVAHVSPFKFPN 108
           V+ S +L K    P+SNS S  + VS  K P+
Sbjct: 396 VASSQSLTKSKTDPQSNSFSSSSTVSSTKLPS 427


>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
            990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 212  NCRIIIYNSVELSLHLAGMRHLPATRSPS 298
            NC  +IYN  E    L  ++HL  ++ PS
Sbjct: 1213 NCPNLIYNWSEAFSQLIALKHLDISKCPS 1241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,462,959
Number of Sequences: 37544
Number of extensions: 116531
Number of successful extensions: 294
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)