Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I02
(306 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8907| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.43
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 29 0.75
SB_36710| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 26 5.3
SB_10989| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.3
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 26 7.0
SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.2
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 25 9.2
SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.2
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 25 9.2
SB_10154| Best HMM Match : RVT_1 (HMM E-Value=4.3e-17) 25 9.2
>SB_8907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -2
Query: 233 CK*LFDSLKNSQKIKVIGSKNNLSQLNK*FLK**SQCCISSPLGNLKGDT*ATLDR 66
CK + S++N +I+ +NN QL F+ C +SPL L+G A L R
Sbjct: 607 CKSAYHSIRNIGRIRKYLDRNNCEQLVHAFITSKLDAC-NSPLSGLQGKKIAKLQR 661
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 29.1 bits (62), Expect = 0.75
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 1 RPYPVSRSPNLPKEPRSPRSNSLSRVAHVSP-FKFP 105
R P SR+P R+PR + LSR VSP F+ P
Sbjct: 189 RDSPASRNPRDSPSSRNPRDSPLSRNPRVSPAFRNP 224
>SB_36710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 4 PYPVSRSPNLPKEPRSPRSNSLSRVAHVSPFKFPNGELIQH*DYYF 141
PYPV+ SPN P L R+ S +G LIQH D+ F
Sbjct: 35 PYPVATSPNPGVTPVRKSGRLLIRLQIHS-----SGSLIQHQDFTF 75
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 4 PYPVSRSPNLPKEPRSPRSNSLSRVAHVSP 93
P+P + P + PR+P + +R H SP
Sbjct: 64 PFPANSPPRVINSPRTPLPANSTRRVHQSP 93
>SB_10989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 4 PYPVSRSPNLPKEPRSPRSNSLSRVAHVSPFKFPN 108
P PV+ S LP S S + + + H P+K PN
Sbjct: 14 PQPVTVSSGLPVSTSSQTSRATTSIGHPVPYK-PN 47
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 1 RPYPVS-RSPNLPKEPRSPRSNSLSRVAHVSPFK 99
R YP+ R+P+LP P S+ + H+ P +
Sbjct: 730 RIYPIRHRAPHLPHTPSRATSSPYATACHIFPIR 763
>SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 247 KFTPRWNAAPSRYPVTF 297
+FT RW+ S YP++F
Sbjct: 909 RFTKRWSVTHSTYPISF 925
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 257 GVNLARPSCK*LFDSLKNSQKIKVIGSKNNLSQLNK 150
G+ +A+P+ + LF+++K ++ + GS NK
Sbjct: 47 GLGMAKPAQRRLFEAIKKGKRRNLFGSFRRKKSKNK 82
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 13 VSRSPNLPKEPRSP 54
+ RSP PK PRSP
Sbjct: 149 IPRSPGFPKSPRSP 162
>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 8 TRCRVVRIYQRNHVHRDPILYQELLMYHLL 97
T+C V+R+ RN R+PIL+ LM H+L
Sbjct: 177 TKCFVMRV-TRN---REPILFNYTLMNHIL 202
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 8 TRCRVVRIYQRNHVHRDPILYQELLMYHLL 97
T+C V+R+ RN R+PI++ +LM H+L
Sbjct: 474 TKCFVMRV-TRN---REPIVFNYILMNHIL 499
>SB_10154| Best HMM Match : RVT_1 (HMM E-Value=4.3e-17)
Length = 264
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 8 TRCRVVRIYQRNHVHRDPILYQELLMYHLL 97
T+C V+R+ RN R+PIL+ LM H+L
Sbjct: 177 TKCFVMRV-TRN---REPILFNYTLMNHIL 202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,719,014
Number of Sequences: 59808
Number of extensions: 138612
Number of successful extensions: 368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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