Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I02
         (306 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10280.1 68417.m01690 expressed protein                             27   2.5  
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi...    26   4.3  
At1g29230.1 68414.m03575 CBL-interacting protein kinase 18 (CIPK...    26   4.3  
At3g20420.1 68416.m02586 ribonuclease III family protein similar...    26   5.7  
At2g46700.1 68415.m05827 calcium-dependent protein kinase, putat...    25   7.6  

>At4g10280.1 68417.m01690 expressed protein
          Length = 140

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 232 QLGRAKFTPRWNAAPSRYPVTFPRS 306
           QLG A + P+W  APS++P  F ++
Sbjct: 61  QLGVASW-PKWEGAPSKFPWEFKKT 84


>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 394

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 115 ARRWEI*KVIHEQLLIENWIAVNVVPLV 32
           A+RWE+    H    IE W+ +  +PL+
Sbjct: 106 AQRWEVNLTFHLLTSIELWVQMRGIPLL 133


>At1g29230.1 68414.m03575 CBL-interacting protein kinase 18 (CIPK18)
           identical to CBL-interacting protein kinase 18
           [Arabidopsis thaliana] gi|14334388|gb|AAK59695
          Length = 520

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 22  SPNLPKEPRSPRSNSL 69
           SP  P+ PRSPR+N L
Sbjct: 55  SPQSPRSPRSPRNNIL 70


>At3g20420.1 68416.m02586 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles: PF00636
           RNase3 domain, PF00035 Double-stranded RNA binding motif
          Length = 391

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 16  SRSPNLPKEPRSPRSNSLSRVAHVSPFKFPNGELIQ 123
           S SP+ P  P S    S+  V  +  +KF N  L++
Sbjct: 43  SLSPSAPSVPVSSEMESMEAVEKILNYKFSNKSLLK 78


>At2g46700.1 68415.m05827 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase homolog MCK1 [Zea mays]
           gi|1839597|gb|AAB47181
          Length = 595

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 238 GRAKFTPRWNAAPSRYPVTFP 300
           GRAK TP  ++ PS +P  FP
Sbjct: 42  GRAKNTPARSSNPSPWPSPFP 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,034,268
Number of Sequences: 28952
Number of extensions: 97575
Number of successful extensions: 246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)