Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I01
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    37   0.001
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    28   0.42 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   2.2  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   2.9  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   3.9  
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1...    24   6.8  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    24   6.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    24   9.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    24   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 31/107 (28%), Positives = 49/107 (45%)
 Frame = +2

Query: 26  QESSKPRI*ARGQDKRLLV*PSWSPSSARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRG 205
           +E SK +  A+  D  ++   + S   A S+  +K + D   A+ +RL   P   G  +G
Sbjct: 299 EELSKSQRVAKDDDPFVVSNTANSDEPASSSKPAKPLTDLNRAFSQRLNLDPQKPGKSQG 358

Query: 206 DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDDEINLD 346
           +ISE E  E   AES DE     +     SE  ++   +  D+ N D
Sbjct: 359 EISEQEEDEYDDAES-DEMHSPYSTHEPESEPEDQDEPSEKDDENKD 404


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 314 VTHSGSRRHELSQP-PGIVSRPGSPPCRSRGAPTRRCPRGEA 192
           ++ S S  H  SQ  PG  S P  P   + G   ++CP  EA
Sbjct: 66  ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCPALEA 107


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
 Frame = -3

Query: 335 FHRQEHRV----THSGSRRHELSQP 273
           FHRQEH+V    +H+G +  E S P
Sbjct: 13  FHRQEHQVRHIRSHTGEKPFECSYP 37


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 275 AERARVSEILNESRDAPDDEINLD 346
           A R+ +S +L ES D P DE++L+
Sbjct: 219 ALRSSLSSLLTESIDLPIDEVSLE 242


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +2

Query: 125 SKNIVDAIGAYVRRLRSR 178
           S+NI+D++G YV +++ +
Sbjct: 360 SRNIIDSLGLYVNKIKEK 377


>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 206 DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDDEINLDDP 352
           +I   E  E      L+   F EAERA  + I +  + AP+ ++ L  P
Sbjct: 3   NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAP 51


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 242 AESLDERRFQEAERARVSEILNESRDA 322
           A+ LDER F+  E    S+ L  ++DA
Sbjct: 450 AQFLDEREFETDEEEEESQYLLSTKDA 476


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 98  PSSARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDISES-EHLENGMAESLDERRFQE 274
           PS++ STP S  I   + + +    S PTS+     D S S   + +G++ S     F  
Sbjct: 519 PSTSSSTPSSSIISSPMTSVLSSSSSIPTSSS---SDFSSSITTISSGISSSSIPSTF-- 573

Query: 275 AERARVSEILNESRDAP 325
              + VS IL+ S  +P
Sbjct: 574 ---SSVSSILSSSTSSP 587


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 191  GLPRGDISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDD 331
            G+ + +   S + + G A    +RR ++ + ++VSE   E +  P D
Sbjct: 1286 GILKTERDTSTNRKQGQASKQPQRRHRKEKDSKVSESTAEFKSLPID 1332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,383
Number of Sequences: 5004
Number of extensions: 22322
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)