Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I01
(376 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 34 0.033
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 33 0.075
SB_29806| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.23
SB_49635| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.53
SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034) 30 0.70
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.93
SB_12548| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 29 1.6
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 28 2.1
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14) 28 2.8
SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26) 28 2.8
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_27246| Best HMM Match : C2 (HMM E-Value=0.026) 27 3.7
SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 27 3.7
SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 27 5.0
SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038) 27 5.0
SB_23233| Best HMM Match : Mucin (HMM E-Value=2.1) 27 5.0
SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41) 27 5.0
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 5.0
SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012) 27 5.0
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1) 27 6.5
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 27 6.5
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 27 6.5
SB_54| Best HMM Match : Actin (HMM E-Value=0) 26 8.7
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 26 8.7
SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038) 26 8.7
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 26 8.7
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 34.3 bits (75), Expect = 0.033
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -3
Query: 278 QPPGIVSRPGSPPCRSRGAPTRRCPRGEAPP 186
QPP SR +PP SRGAP RG APP
Sbjct: 286 QPPPPPSRGAAPPPPSRGAPPPPPSRGSAPP 316
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 33.1 bits (72), Expect = 0.075
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 275 PPGIVSRPGSPPCRSRGAPTRRCPRGEAP 189
PPG + PG PP R AP PRG AP
Sbjct: 808 PPGGRAAPGGPPLRGGMAPRGAVPRGMAP 836
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 175 PADV-GGASPRGHLRVGAPRERHGGEPGRETIPGG 276
PA V GG + RG +R G P R PG PGG
Sbjct: 784 PAPVHGGLAGRGAMR-GVPVARGAPPPGGRAAPGG 817
>SB_29806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 31.5 bits (68), Expect = 0.23
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 128 KNIVDAIGAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERRFQEAERARVSEILN 307
+++ D++ Y+ + + R + + S H +G+ L +RR + E R+S++
Sbjct: 325 ESVTDSVTQYLTQSKKRKAESLIEFQGTKSSRHRTDGLISGLPDRRHETIE-TRLSQLQE 383
Query: 308 ESRDAPDDEINLDDPC--MKVHCS 373
RD ++ NL PC ++VH S
Sbjct: 384 SIRDERRND-NL-PPCKALRVHVS 405
>SB_49635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 30.3 bits (65), Expect = 0.53
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 248 SLDERRFQEAERARVSEILNESRDAPDDEINLDDPCM 358
SLDE ++ AE +RVS I +S ++ D E D C+
Sbjct: 30 SLDEHKWMVAEMSRVSRI-QQSEESQDKETKQDQACI 65
>SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)
Length = 629
Score = 29.9 bits (64), Expect = 0.70
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 95 SPSSARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERRFQE 274
SP AR PR + + V +L S S G+P+G ++G SL R +
Sbjct: 291 SPPQAREVPRLSHQMSPAAEPVSQLMSSIPSPGMPQG-AGHGVSRDHGQTGSLSHREMVQ 349
Query: 275 AER 283
A R
Sbjct: 350 AAR 352
>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1453
Score = 29.5 bits (63), Expect = 0.93
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 329 RQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSA 177
R++ R T+S +R+ P + P S + G P P PPT A
Sbjct: 72 REKRRTTNSANRKPANRSPSKRENGPSSQSFQISGVPAELSPAAAKPPTPA 122
>SB_12548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 104 SARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDI 211
S+RS+PR V A G+ V S SAGLP D+
Sbjct: 311 SSRSSPRDSVKVSATGSPVPPAGSPAPSAGLPASDV 346
>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 765
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 221 EHLENGMAESLDERRFQEAERARVSEILNESRDAPDDEINLDD 349
E+L + + + D Q ER R++E+ E+RD EIN D
Sbjct: 91 ENLSDRLRQKADLTLAQAIERCRMNEMRKENRDLVLGEINKSD 133
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.7 bits (61), Expect = 1.6
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +2
Query: 98 PSSARSTPRSKNIVDAIGAYVR----RLRSRPTSAGLPRG--DISESEHLENGMAESLDE 259
P S RS P G YV R R + G RG + ES E M E +E
Sbjct: 983 PLSFRSVPDVGGRSRMEGGYVSDGGYRRRDEEDTIGRVRGRRERGESRSREEIMREE-EE 1041
Query: 260 RRFQEAERARVSEILNESRDAPDDE 334
R +EA+R R E + E + D+E
Sbjct: 1042 RERREADRRREEERIAEQKRRDDEE 1066
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 275 PPGIVSRPGSPP-CRSRGAPTRRCPRGEAPPTS 180
PPGI G PP GAP P G APPTS
Sbjct: 71 PPGIAPGIGGPPPSGQYGAPPTSQPYG-APPTS 102
>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
Length = 427
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2
Query: 140 DAIGAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERRFQEAERARVSEILNESRD 319
D GA+ RRL S + L R I ++ EN L ER ++ + R L E+
Sbjct: 5 DGYGAFKRRLESPASQRKLKRRSIEDNS--ENNSPFELSERNCLKSRKIRKLPSL-ENLQ 61
Query: 320 APDDEINLDDP 352
+P++ I P
Sbjct: 62 SPNNPIGEPSP 72
>SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)
Length = 631
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 191 GLPRGDISESE---HLENGMAESLDERRFQEAERARVSEILNESRDAPDDEINL 343
G+P + +S+ LEN + +DE + ++ ER +V ++L ++ D + L
Sbjct: 31 GVPYPQLDQSQTILRLENDLRTKVDELKMEKHERIKVLKVLRDTERQLCDRLRL 84
>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 27.9 bits (59), Expect = 2.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +2
Query: 89 SWSPS----SARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRG-DISESEHLENGMAESL 253
SW+PS +ARS + +V I + RG DI HL G+A +L
Sbjct: 20 SWNPSLFSRTARSFLQKLPVVSQISPFSMSNERHVNKIPTIRGTDIMRDSHLNKGLAFTL 79
Query: 254 DERR 265
+ER+
Sbjct: 80 EERQ 83
>SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)
Length = 576
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = +2
Query: 101 SSARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERRFQEAE 280
SSAR+ R++ + + ++ R R + P G++ ES + +G + F++A
Sbjct: 295 SSARTNRRARAQITIVRDIIKLRRKRVPAEVEPSGELGES--MTSGAEATTGTSEFEDAI 352
Query: 281 RARVSEILNESRDAPDDEINLD 346
+ SR+ + N+D
Sbjct: 353 DTADETFADSSREVSEKFTNVD 374
>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 199 PRGHLRVGAPRERHGGEPGRETIPG 273
PR +R AP R GG+PG+ TI G
Sbjct: 2 PRYKIRNTAPDLRFGGDPGKVTIFG 26
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/81 (20%), Positives = 38/81 (46%)
Frame = +2
Query: 95 SPSSARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERRFQE 274
SP + K ++ A+ + + + LP + S + ++NG E LDE
Sbjct: 2745 SPPDLKKDEEDKAVIAAMPSPITEPERKVYKEELPSYE-SAPDKMDNGQEEMLDEIEAAT 2803
Query: 275 AERARVSEILNESRDAPDDEI 337
AE+ +++ ++++ P +E+
Sbjct: 2804 AEKTADADVF-KTKELPVEEL 2823
>SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 332 HRQEHRVTHSGSRRHELSQPPGIVSRPGS 246
H +EH +TH+G + H+ Q +R G+
Sbjct: 71 HLKEHLITHTGQKPHQCDQCGKCFTRSGN 99
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 332 HRQEHRVTHSGSRRHELSQPPGIVSRPGS 246
H +EH +TH+G + H+ Q +R G+
Sbjct: 183 HLKEHLITHTGQKPHQCDQCGKRFTRSGN 211
>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
Length = 1266
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 278 QPPGIVSRPGSPPCRSRGAPTRRCPRGEAPP 186
+PP IV+ + P + +G PT++ G +PP
Sbjct: 1097 RPPAIVTAAVARPPQVQGPPTQQVVPGSSPP 1127
>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 221 EHLENGMAESLDERRFQEAERARVSE 298
E LENGM E+ ++RR + A R+ V++
Sbjct: 424 ELLENGMIETTNQRRGEFARRSNVTK 449
>SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038)
Length = 354
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 278 QPPGIVSRPGSPPCRSRGAPTRRCPRGEAPP 186
QPPG +S P +PP A R RGE PP
Sbjct: 91 QPPGGMSYPPAPPPPGHAAGYR---RGEYPP 118
>SB_23233| Best HMM Match : Mucin (HMM E-Value=2.1)
Length = 350
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -3
Query: 197 EAPPTSAGSXXXXXXXXXXXRCFWTSASTVQMTATTRVTLTASYPDPWLICVVLKTPASD 18
+AP T+ + S S TATT T+++S P V +P+ D
Sbjct: 149 DAPQTTLSTLTTTTTTTTSSSIATPSTSGTYTTATTTTTVSSSIATPSTTIVTSPSPSFD 208
>SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41)
Length = 901
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -3
Query: 278 QPPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAGSXXXXXXXXXXXRCFWTSASTVQMT 99
Q P S G PP +P +R P +PP+ S R +T+ S++
Sbjct: 254 QSPLGSSLHGVPPNSVPQSPVQRSPSAMSPPSLGTSQYKASSVTTQHRQSFTTGSSMLSQ 313
Query: 98 ATTRVTLTASYPDPWL 51
T V +T + D L
Sbjct: 314 QTDNVKITRNVSDSQL 329
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 200 RGDISESEHLENGMAESLDERRFQEAERARVSE---ILNESRDAPDDEIN 340
R + E LE + ++RR +EAE R+ E L E R + D+E N
Sbjct: 414 RKEQEEKRKLEEQKRKEEEDRRRKEAEEKRIKEEEARLKEERRSKDEEEN 463
>SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012)
Length = 1119
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +2
Query: 95 SPSSARSTPRSKNIVDAIGAYVR--RLRS-RPTSAGLPRGDISE---SEHLENGMAESLD 256
+P+S+ TPR K +V++ G +V+ + S R + A + + +E E L+ E +
Sbjct: 603 APASSTGTPRVKGVVESSGVHVKVDEVPSERESDAERRKREENERFRQESLKREADELMQ 662
Query: 257 ERRFQEAERAR 289
++R +E E R
Sbjct: 663 QKRIREEELQR 673
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 95 SPSSARSTPRSKNIVDAIGAYVR 163
+P+S+ TPR K +V++ G +V+
Sbjct: 1075 APASSTGTPRVKGVVESSGVHVK 1097
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 95 SPSSARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERR 265
SP S+R P ++ + + + +RP+SA P + S +EN + SL +RR
Sbjct: 29 SPKSSR--PGRSSLASSTDSITQTSNARPSSASKPSNSRTRSASVEN-LDMSLQQRR 82
>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +2
Query: 149 GAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPD 328
G V R SRP SA +PR IS+ ++ + A ++++ A
Sbjct: 524 GGCVLRTTSRPLSAPMPRRSISDLARELPTRGQATRSVSLPDLTMATSRALISDGEQAKS 583
Query: 329 DEINLDDP 352
++ LD P
Sbjct: 584 SKLLLDTP 591
>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
Length = 456
Score = 26.6 bits (56), Expect = 6.5
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = -3
Query: 350 DRQD*FHRQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRS-----RGAPTRRCPRGEAPP 186
D D RQE + +R+ PP + P P C + R PTRRCP G P
Sbjct: 121 DSNDPECRQETTIVKK-LQRYPRKDPPKCPN-PSDPYCSTDDMIGRNVPTRRCPDGTNGP 178
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 26.6 bits (56), Expect = 6.5
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 86 PSWSPSSARSTPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDISESEHLENGMAESLDERR 265
P+W + ++T S + +G V+R R RP + + S H + + ERR
Sbjct: 246 PAWMATGGQATTASPPVTKPVGGPVKRGRGRPRKNPDAPSNNNTSGH-DLAYIPTPAERR 304
Query: 266 ---FQEAERARVSEILNESRDAPDDEINLDD 349
+++ + E+L E DDE ++++
Sbjct: 305 QPVYRDTDDDVDRELLEEFMFDNDDEDDIEE 335
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 200 RGDISESEHLENGMAESLDERRFQEAERARVSEILNESRD 319
+ D E+ L+N M +SLD+ R ++ S I E RD
Sbjct: 420 KADSYENISLDNTMVDSLDDDRESVCSNSKKSAIFLEIRD 459
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 320 HRVTHSGSRRHELSQPPGIVSRPGSPP 240
H+ T S SRRH LS + + P PP
Sbjct: 350 HQTTGSRSRRHVLSDDALLHTAPARPP 376
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +1
Query: 175 PADVGGASPRGHLRV---GAPRERHGGEPGRETIP 270
P GG SP G +R+ G P HGG T+P
Sbjct: 25 PLTHGGMSPHGTVRLGRHGTPPLTHGGMSPHGTVP 59
>SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)
Length = 318
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 107 ARSTPRSKNIVDAIGAYVRRLRSRPTSA 190
AR +PR N D+I + R RS PT +
Sbjct: 230 ARYSPRKTNKTDSIRTFPRHERSSPTGS 257
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 113 STPRSKNIVDAIGAYVRRLRSRPTSAGLPRGDISE 217
S+ IG V R SRP SA +PR IS+
Sbjct: 349 SSDNDNESASRIGGCVLRTVSRPLSAPMPRRSISD 383
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -3
Query: 314 VTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAGS 171
V SR + S I S PGSPP + P P P+ GS
Sbjct: 855 VARKPSRSNSTSSQQSIESAPGSPPTGADDFPPPPPPPVMKKPSRGGS 902
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,068,075
Number of Sequences: 59808
Number of extensions: 212535
Number of successful extensions: 855
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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