Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I01
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.67 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 161 RRLRSRPTSAGL---PRGDISESEHLENGMAESLDERRFQEAERA 286
           RRLR R  + G     R D  E+E  E+G  +S  E+R +  E A
Sbjct: 264 RRLRKRRQNDGEGADDRDDDEENEEEEDGRGQSEAEKRLKLDEDA 308


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 175 PADVGGASP--RGHLRVGAPRERHGGEPGRETI 267
           P+    +SP  +G    G P +R+GGE  ++ +
Sbjct: 521 PSSSTSSSPPAKGAAAAGQPSKRNGGETNKQEL 553


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 122 SASTVQMTATTRVTLTASYPDPWLI 48
           +A     TA+   TLT + P  W++
Sbjct: 659 TAENAAGTASHSTTLTVNVPPRWIL 683



 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 221 EHLENGMAESLDERRFQEAERARVSEILNESRDAPDDEINL 343
           E L NG+   L  +R + ++ A  + +   +  + D  IN+
Sbjct: 830 EILANGVLSDLSIKRTERSDSALFTCVATNAFGSDDTSINM 870


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 114 DRADDGDHEGHTNSLLS*PLAYMRGFEDSCQRPLSRER 1
           ++ +  D EG+ +S++S  L  +    D C R   R +
Sbjct: 691 EQTESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRK 728


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,568
Number of Sequences: 438
Number of extensions: 1952
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)