Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H23
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 221 7e-59
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 208 5e-55
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 1.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 1.8
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.1
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 5.4
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.4
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 5.4
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 7.1
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 7.1
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 7.1
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.1
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 9.4
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 25 9.4
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 221 bits (539), Expect = 7e-59
Identities = 102/141 (72%), Positives = 120/141 (85%)
Frame = +3
Query: 6 ICYDVLCLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDA 185
IC D+L +L+KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R + S + Y+ A
Sbjct: 98 ICQDILTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAA 157
Query: 186 FEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYK 365
EI+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYK
Sbjct: 158 SEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYK 217
Query: 366 DSTLIMQLLRDNLTLWTSDTQ 428
DSTLIMQLLRDNLTLWTSD +
Sbjct: 218 DSTLIMQLLRDNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 208 bits (507), Expect = 5e-55
Identities = 96/142 (67%), Positives = 117/142 (82%)
Frame = +3
Query: 3 EICYDVLCLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQD 182
+IC+DVL +L+KHLIP A+ ESKVFY KMKGDYYRYLAE GE + S +AY+
Sbjct: 96 DICHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKA 155
Query: 183 AFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSY 362
A +I+ A++ PT P+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SY
Sbjct: 156 ASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESY 215
Query: 363 KDSTLIMQLLRDNLTLWTSDTQ 428
KDSTLIMQLLRDNLTLWTSD +
Sbjct: 216 KDSTLIMQLLRDNLTLWTSDAE 237
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 108 RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 254
RY+ ++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 27 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 164
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +3
Query: 165 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 338
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 339 DTLNEDSYKDSTLIMQLLRDN 401
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +3
Query: 18 VLCLLDKHLIPKASN-PESKVFYLKMKGD--YYRYL 116
VL L+ L+ A+ PE K+FY K GD Y +YL
Sbjct: 509 VLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYL 544
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 218 CGLHFCLADLKSILVCFL*ILYNRMSGFSCGHFC 117
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 128 GHFCEIPVVISLHFEVKYFTF 66
G+FC++P V+ L K++ F
Sbjct: 341 GNFCDLPKVVELKNRYKFYLF 361
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -1
Query: 224 WVCGLHFCLADLKSILVCFL*ILYNRMSGF-SCGHFCEIPVVISLHFEVKYFTFWITSFR 48
++ GL + ++ + C ILY F S + I+ F + YF +W+ SF
Sbjct: 152 FIAGLFYYGTNVYTGAECVQTILYAIFKSFRSYKNRLPADAGITSDFLISYFVYWVISFP 211
Query: 47 YKVL 36
+ ++
Sbjct: 212 FHLI 215
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 7.1
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = +3
Query: 15 DVLCLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEI 194
DV+C + L+P PE K+FY + +G S SQ+ D +EI
Sbjct: 178 DVICGKEAFLLPLNEYPEYKLFY------------PIKSGVFNESDYASSQQLLADIYEI 225
Query: 195 SKAKMQPTHPIRLGLALNFSVFY 263
K + I + +SV +
Sbjct: 226 FKYSITSLLQIPVSQLSQYSVIF 248
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 39 HLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDS 164
H SNP S K KG++ Y A G ++ +DS
Sbjct: 225 HTSKTYSNPSSFATRKKEKGEHLSYAEAAAVGTQAKNIKKDS 266
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 113 IPVVISLHFEVKYFT-FWIT 57
+P++I LHF K FT W+T
Sbjct: 62 LPILIRLHFYKKLFTILWLT 81
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 33 DKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 152
+KHLI ++NP+ F D Y EV T+ SV
Sbjct: 354 EKHLIALSNNPKGDEFLSPSNLDEMVYSKEVGLSFTQPSV 393
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 30 LDKHLIPKA--SNPESKVFYLKMKGDYYRYLA 119
+++H + K+ S P S+ YLK+ YR+LA
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLA 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,479
Number of Sequences: 5004
Number of extensions: 36139
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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