Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H23
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             191   4e-49
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     186   1e-47
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             33   0.15 
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 31   0.59 
SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_14160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)                  28   4.2  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)                    28   4.2  
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)                 28   5.5  
SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  191 bits (465), Expect = 4e-49
 Identities = 99/157 (63%), Positives = 115/157 (73%), Gaps = 4/157 (2%)
 Frame = +3

Query: 3   EICYDVLCLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQD 182
           E+C  VL LL+  LIP A + ESKVFYLKMKGDYYRY  EVA  + R  VV+ + KAY +
Sbjct: 71  EVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREVVQKAMKAYSE 130

Query: 183 AFEISKA--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNED 356
           A EI++   K+ PT PIRLGLALNFSVFYYEI+    +AC LAK+AFDDAIAELDTL+ED
Sbjct: 131 AQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDAIAELDTLSED 190

Query: 357 SYKDSTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 461
            YKDSTLIMQLLRDNLT+     Q   +  E AE GD
Sbjct: 191 QYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227



 Score =  138 bits (335), Expect = 2e-33
 Identities = 69/103 (66%), Positives = 86/103 (83%), Gaps = 4/103 (3%)
 Frame = +3

Query: 147 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 317
           +VVE + +AY++A E ++    K+ PT PIRLGLALNFSVF+YEI  + ++AC+LAKQAF
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAF 266

Query: 318 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD-GDE 443
           DDAIAELD+LNED YKDSTLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 267 DDAIAELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  186 bits (453), Expect = 1e-47
 Identities = 89/148 (60%), Positives = 114/148 (77%), Gaps = 3/148 (2%)
 Frame = +3

Query: 9   CYDVLCLLDKHLIPKAS---NPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQ 179
           C +VL +L+ +L+       N E+KVFYLKM+GDY+RYL EVA G++R   +E S++AY+
Sbjct: 100 CAEVLDILENYLLKDGQDDINTEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKSREAYK 159

Query: 180 DAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDS 359
           DA      ++ P+HPIRLGLALNFSVFYYEI N P +AC+LAK+AFDDAIA LD L ++S
Sbjct: 160 DA-SAKAEELSPSHPIRLGLALNFSVFYYEIENKPPEACKLAKEAFDDAIAVLDNLKDES 218

Query: 360 YKDSTLIMQLLRDNLTLWTSDTQGDGDE 443
           YKDSTLIMQLLRDNLTLWTS+   +G +
Sbjct: 219 YKDSTLIMQLLRDNLTLWTSEQDQEGQD 246


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +3

Query: 3   EICYDVLCLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 137
           ++C +VL +L++ LIP A + E+KVFY K+KGDYYRYLAE + G+
Sbjct: 172 DLCKEVLGILER-LIPGAEDEENKVFYFKLKGDYYRYLAEFSHGQ 215


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 6   ICYDVLCLLDKHLIPKASNPESKVFYLKM 92
           IC ++L LLD  LI  + + ESKVFY K+
Sbjct: 97  ICGEILSLLDDSLIKNSQSEESKVFYNKI 125


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 318 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 455
           DD   + D  ++DS  + +   QL   L+  + LW S TQGD D  A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 330 RSHHRTPVWRADTPCLVNLISHNRRRRNLTPN 235
           RSHH+  V     PC  +L+S   RR+N+TP+
Sbjct: 194 RSHHQWSVPPGTDPC-TDLLSRGGRRQNMTPH 224


>SB_14160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 330 RSHHRTPVWRADTPCLVNLISHNRRRRNLTPN 235
           RSHH+  V     PC  +L+S   RR+N+TP+
Sbjct: 33  RSHHQWSVPPGTDPC-TDLLSRGGRRQNMTPH 63


>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 293 VSARQTGVR*CDRGTRHT 346
           V  RQ+GVR C RG RHT
Sbjct: 148 VMVRQSGVRYCSRGIRHT 165


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 126  ATGETRHS-VVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 281
            A GETR    + D+ +A +D     KA+ Q     +   ALN S+F++E++NS
Sbjct: 4020 ALGETRRKRSLVDTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067


>SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)
          Length = 198

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 399 NLTLWTSDTQGDGDEPAEGGDN*C 470
           NL+L+T+D  G+   P E GDN C
Sbjct: 39  NLSLFTNDASGNLQPPREIGDNLC 62


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 399 NLTLWTSDTQGDGDEPAEGGDN*C 470
           NL+L+T+D  G+   P E GDN C
Sbjct: 357 NLSLFTNDASGNLQPPREIGDNLC 380


>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 399 NLTLWTSDTQGDGDEPAEGGDN*C 470
           NL+L+T D+ G    PAE G+N C
Sbjct: 701 NLSLFTKDSSGQLQPPAEIGENLC 724


>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
          Length = 711

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 342 CRVPRSHHRTPVWRADTPCLVNL--ISHNRRRRN--LTPNPALL 223
           CR+P S HR    R ++ C  N+  +S   R R   LTP P LL
Sbjct: 651 CRLPSSRHRRRNVRGNSRCRGNVRALSSPMRARTLPLTPRPPLL 694


>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
          Length = 983

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 261 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD 434
           YY I  +  K      Q FDD    +   +ED+ +D+T  ++L+       T+D  GD
Sbjct: 505 YYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATTAIELMNAP----TTDVHGD 558


>SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 12  YDVLCLLDKHLIPKASNPESKVFYLKMKGDYY 107
           YD   ++  HL+P A     +++ +K+  DYY
Sbjct: 6   YDSNTVVSHHLLPSAQTRYIRIYPVKVNSDYY 37


>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 233 GFGVKFLRLLL*DIKFTRQGVSARQTGVR*CDRGTRHTER 352
           GFG  FL++LL  + F ++G+          D+G R +E+
Sbjct: 256 GFGRTFLKVLLLPLLFLKKGLREISENALIVDKGQRSSEK 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,925
Number of Sequences: 59808
Number of extensions: 271107
Number of successful extensions: 830
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)