Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H22
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.68 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.6  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   4.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   4.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   8.3  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    25   8.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.3  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -2

Query: 317 NGEDTTFLSFPDVYASLRSFIEVLSMASPKAVLLYSWSKK*NART-LQTAITANKYNLIM 141
           N +DT+ L  PD+ +S  S  E L    P+   L+S +   N+ T  Q + T +K ++  
Sbjct: 433 NNKDTSKLENPDISSSPLSPTEDLFPNDPEEENLFSAALGLNSNTGSQPSETQSKPSIDP 492

Query: 140 LTRPRVVDNQNTIMY 96
                V DNQ+++++
Sbjct: 493 SESITVTDNQDSLLF 507


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = +1

Query: 274  AYTSGKDKNVVSSPLGVMMLM----LLYKSGAG--EGSRVEIDKFLGDVDYSEATNPYIS 435
            A+TS K K ++   L +M+L+    L   S A    G+   + +          TN + S
Sbjct: 1009 AFTSMKSKEILPEVLWIMLLVHLADLCENSWASVRNGAAQILFRIFNSQCSKLGTNAWAS 1068

Query: 436  LSKTVLGDECGFLSSRPIQSTSDIN 510
              + V+      L S+PIQ+ SD+N
Sbjct: 1069 CCQLVI---MKLLHSQPIQNVSDVN 1090


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 331 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNP 426
           L+   K G+G G   + + FLGD+ Y  +  P
Sbjct: 243 LLAFDKIGSGSGDLSKCESFLGDILYMVSKEP 274


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 419 VASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTFLSFPDVYASLRS 261
           VAS   TSP  L+++ + PSP P    S + +T     T          SLRS
Sbjct: 549 VASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRS 601


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 590 FGIAEVNSFNLALVLTGRAREFLIQSIFMSDVDCI 486
           FG  + ++FN   VL   A +F    +F   +DCI
Sbjct: 735 FGFIDSSAFNSFFVLLHHAVDFDAPEVFRPLLDCI 769


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -2

Query: 464 HSSPRTV--LLRLMYGLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTFLS 291
           HSSP ++  ++     +  SL  ++   L  S ++   AP L     +++ N    T   
Sbjct: 267 HSSPLSLSPVITSDNDVANSLFFSNSTPLPSSLKIKKEAPKLETHTILVSDNSGSLTKQD 326

Query: 290 FPDVYASLRSFIEVLSMASPK 228
               +A ++  IEV  + SPK
Sbjct: 327 ILSYFAFIKGNIEVFFLKSPK 347


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 403 DYSEATNPYISLSKTVLGDECGFLSSRPI 489
           ++ E  NPY     TVL  +  FL SRP+
Sbjct: 257 EFGEKDNPYYFHPFTVLETDENFLYSRPL 285


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 322  VMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTVLGDECG 468
            ++ LM ++ S +G   R E     G+ +Y EA +     S+ +  D CG
Sbjct: 920  LLSLMPIFISNSGNDIRTECKA--GEKEYKEAKSERRRPSRLIFYDNCG 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,048
Number of Sequences: 5004
Number of extensions: 47942
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)