Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H22
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    31   0.52 
02_04_0027 - 19014033-19014127,19014219-19014315,19014560-190146...    27   8.5  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 286 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYI-SLSKTVLGDE 462
           G  +NV  SPL + + + L  +GAG  +R ++   LG    +E  + +   L + VL D 
Sbjct: 32  GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADA 91

Query: 463 CG 468
            G
Sbjct: 92  SG 93


>02_04_0027 -
           19014033-19014127,19014219-19014315,19014560-19014673,
           19014759-19014923,19015169-19015306,19015402-19015478,
           19015572-19015686,19015756-19015861,19016182-19016243,
           19016407-19016472,19016628-19016810,19017359-19017415,
           19017848-19017896,19017983-19018131,19019203-19019250,
           19020061-19020201
          Length = 553

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 349 SGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTVLGDECGFLSSRPI 489
           + A E +    D+FL       +T   +SLS + LGD+  F  S P+
Sbjct: 21  AAAAEAASAAADRFLRSRGAGASTQVELSLSASNLGDQEFFTKSNPM 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,897,592
Number of Sequences: 37544
Number of extensions: 301451
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)