Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H22
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)              30   1.6  
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)                      29   3.7  
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)                       28   6.5  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   8.6  

>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 385 KFLGDVDYSEATNPYISLSKTVLGDECGFLSSRPIQSTSDINILWMRNSRALPVSTKARL 564
           +F    +Y +   PY+ L+  V     GFL S  + S+   ++  +R  R LPV+ K   
Sbjct: 108 QFAAYEEYKKGIAPYVGLNFAVYETLKGFLFSTVMASSQGASLTNIRKDRELPVNFKLMC 167

Query: 565 KLLTSAI 585
             L  A+
Sbjct: 168 GSLAGAV 174


>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
          Length = 361

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 376 EIDKFLGDVDYSEATNPYISLSKTV 450
           ++D F GD+  +EA+NP+I+  K V
Sbjct: 216 DMDSFTGDIPETEASNPFIAPQKVV 240


>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
          Length = 672

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 482 REDRNPHSSPRTVL-LRLMYGLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGED 306
           R  ++P   PR+V   RL    V  L ST P +LS S+R  SP+  L  S ++   N   
Sbjct: 526 RRSKSPVRRPRSVSPSRLGNSTVEPLPSTEPLSLSYSSRPASPSRSL--SYALDDLNVTS 583

Query: 305 TTFLSFPDVYASLRS 261
            ++  F D     +S
Sbjct: 584 NSYKKFSDPLLRFKS 598


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 430 ISLSKTVLGDECGFLSSRPIQSTSDINILWMRN-SRALPVSTKARLKLLTSAIPKK 594
           +S+S  + G     L+  PIQ+   + +L + N SRA P S + RL LLT ++ K+
Sbjct: 141 VSISTVIEGGTTSILTRPPIQAFLIVLLLAIINKSRAKPESLRERL-LLTLSLAKR 195


>SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 106 VFWLSTTRGRVNMIKLYLFAVIAVCNVRAF 195
           + WL    G+ + + +Y + V+A CN+  F
Sbjct: 264 IMWLWLDFGKADQVFVYFWEVVAFCNIMTF 293


>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
          Length = 410

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = -2

Query: 536 AREFLIQSI-FMSDVDCIGREDRNPHSSPRTVLLRLMY---GLVASL*STSPKN 387
           ++E L +++ F +D DCI  E+ N H +PR  L   +Y   GL  +  S +PKN
Sbjct: 94  SQELLNKALDFAADYDCITAEE-NKHHNPRQELYPRLYCDDGLAIT--SATPKN 144


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 160  FAVIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTS 285
            + +  V  ++  + F+H Y+R  +  AI K S  L+KE  TS
Sbjct: 1218 YGISNVLPLKKAFTFNHTYSRHGIFKAILKGSGNLIKEEVTS 1259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,539
Number of Sequences: 59808
Number of extensions: 363770
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)