Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H22
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical ...    29   3.3  
U64605-1|AAF98601.1|  212|Caenorhabditis elegans Initiation fact...    28   4.4  
AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF214651-1|AAF62414.1|  212|Caenorhabditis elegans translation i...    28   4.4  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical
           protein Y37F4.7 protein.
          Length = 93

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 138 DSSARSRQPKYNNVLMQTDSETPTKETHLTTSFN 37
           +S+ R R P   ++ M  D+ +P K+  +T S+N
Sbjct: 35  ESAPRMRSPTETHIEMPRDTPSPVKDPEVTCSYN 68


>U64605-1|AAF98601.1|  212|Caenorhabditis elegans Initiation factor
           4e (eif4e) familyprotein 4 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 448 VLGDE-CGFLSSRPIQSTSDINILWMRNSRALPVSTKAR 561
           ++GDE CG + S  I++  DI  LW RN+   PV+ + R
Sbjct: 137 LVGDELCGAVCS--IRNQEDIISLWNRNADDTPVTNRIR 173


>AL032658-1|CAA21743.2|  782|Caenorhabditis elegans Hypothetical
           protein Y76A2B.2 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 457 DECGFLSSRPIQ--STSDINILWMRNSRALPVSTKA 558
           DEC   S  P+     S I+ LW RNSR   ++T+A
Sbjct: 114 DECTISSLAPVSFAGLSHIDHLWFRNSRIDVIATEA 149


>AF214651-1|AAF62414.1|  212|Caenorhabditis elegans translation
           initiation factor eIF4Eisoform 4 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 448 VLGDE-CGFLSSRPIQSTSDINILWMRNSRALPVSTKAR 561
           ++GDE CG + S  I++  DI  LW RN+   PV+ + R
Sbjct: 137 LVGDELCGAVCS--IRNQEDIISLWNRNADDTPVTNRIR 173


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 135 SSARSRQPKYNNVLMQTDSETPTKETHLTTSFNITC 28
           +S  +  PK+    +QT  +  T  T  T S  ITC
Sbjct: 244 TSTSTTTPKFTTTTIQTTKKITTSPTSTTASIPITC 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,971
Number of Sequences: 27780
Number of extensions: 270924
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)