Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H22
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.14 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.14 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 480 TANTIYVGHKYTLDEKFTSSSRQYQSEVETID 575
           T   +++GH   L +   SS RQY+ +V+ ++
Sbjct: 365 TCYALFLGHATNLIQSLDSSRRQYREKVKQVE 396


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 480 TANTIYVGHKYTLDEKFTSSSRQYQSEVETID 575
           T   +++GH   L +   SS RQY+ +V+ ++
Sbjct: 333 TCYALFLGHATNLIQSLDSSRRQYREKVKQVE 364


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 508 NILWMRNSRALPVSTKARL 564
           +I+W R++R LP++ K ++
Sbjct: 521 SIVWERDTRVLPINRKQKV 539


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 376 PHDYLHRRLICREALASSRLMVKTQHSCPSQMY 278
           P D + RR++ +   A S ++ K+   C + +Y
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 376 PHDYLHRRLICREALASSRLMVKTQHSCPSQMY 278
           P D + RR++ +   A S ++ K+   C + +Y
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 278  YASLRSFIEVLSMASPKAVLLYSWSKK*NARTLQTAITANKYN 150
            +  LRS +E+L ++  + V    W    NAR ++ ++ +N ++
Sbjct: 886  FLPLRS-LEILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWS 927


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,247
Number of Sequences: 438
Number of extensions: 3559
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)