Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H22
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29300.1 68415.m03559 tropinone reductase, putative / tropine...    29   2.3  
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein...    28   4.1  
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   7.1  
At4g13330.1 68417.m02083 expressed protein                             27   9.4  
At2g29320.1 68415.m03561 tropinone reductase, putative / tropine...    27   9.4  
At2g29260.1 68415.m03555 tropinone reductase, putative / tropine...    27   9.4  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   9.4  

>At2g29300.1 68415.m03559 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 263

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 51  SSEFL*LVSQNLSASVHYCILVVDYARTSQHDQVIFIRGYRGL 179
           + +F   +S NL A+ H+C L     +TS +  ++F+    G+
Sbjct: 108 ADDFTFHISTNLEAAYHFCQLSHPLLKTSGYGSIVFLSSVSGV 150


>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 377

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 193 FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 366
           +YFF H+  +   G   ++ +M    +A  +G+DK V   S  +G+   ++ YK  A  G
Sbjct: 69  WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126

Query: 367 SRVE 378
            + +
Sbjct: 127 QKTD 130


>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 150 LDHVDSSARSRQPKYNNVLMQTDSETPTKETHLTTSFNI 34
           +D + S AR          M+  S+ PTK T L+TSFN+
Sbjct: 77  IDEMVSVAREFFSMSMEEKMKLYSDDPTKTTRLSTSFNV 115


>At4g13330.1 68417.m02083 expressed protein 
          Length = 428

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 247 YQWRHLRLSCCTRGQRNRMLARCR 176
           YQWR LR +  TR    +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137


>At2g29320.1 68415.m03561 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 269

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 51  SSEFL*LVSQNLSASVHYCILVVDYARTSQHDQVIFIRGYRGL 179
           + +F   +S NL A+ H+C L     + S +  ++F+    G+
Sbjct: 114 ADDFTFHISTNLEAAYHFCQLSHPLLKASGYGSIVFLSSVAGV 156


>At2g29260.1 68415.m03555 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 322

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 51  SSEFL*LVSQNLSASVHYCILVVDYARTSQHDQVIFIRGYRG 176
           + EF  L+S N  +  H C L     R S+   V+FI    G
Sbjct: 169 AGEFSTLMSTNFESVFHLCQLAYPLLRESKAGSVVFISSVSG 210


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 416 ASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTF 297
           +SL  +SP  LS+S   P P P     +S ++P+   +T+
Sbjct: 100 SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTY 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,212
Number of Sequences: 28952
Number of extensions: 248422
Number of successful extensions: 667
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)