Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H20
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    34   0.049
At3g02280.1 68416.m00209 flavodoxin family protein low similarit...    29   2.4  
At1g70900.1 68414.m08181 expressed protein                             29   2.4  
At1g23110.1 68414.m02889 hypothetical protein                          29   2.4  
At5g19010.1 68418.m02258 mitogen-activated protein kinase, putat...    28   4.2  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    28   4.2  
At3g25140.1 68416.m03139 glycosyl transferase family 8 protein c...    28   4.2  
At5g35940.1 68418.m04325 jacalin lectin family protein similar t...    27   5.6  
At4g30550.1 68417.m04336 glutamine amidotransferase class-I doma...    27   5.6  
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    27   5.6  
At2g20170.1 68415.m02358 hypothetical protein  and grail contain...    27   5.6  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    27   7.4  
At3g13170.1 68416.m01647 DNA topoisomerase VIA (SPO11-1) identic...    27   7.4  
At2g23990.2 68415.m02866 plastocyanin-like domain-containing pro...    27   7.4  
At2g23990.1 68415.m02865 plastocyanin-like domain-containing pro...    27   7.4  
At1g76740.1 68414.m08931 expressed protein weak similarity to fi...    27   9.8  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 34.3 bits (75), Expect = 0.049
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
 Frame = +3

Query: 180 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFT 359
           NVV SP+ + +L+ L  AG+   ++ EI  FL +     +      ++   +E +    +
Sbjct: 31  NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIADGGTERSDLCLS 90

Query: 360 MANKIYVGNKYTLDEKF-TITVRQYQSEVETIDFSDTK--KAADIINQWANEKT 512
            A+ +++     L   F  +    Y++    +DF+ TK  +  D +N WA+  T
Sbjct: 91  TAHGVWIDKSSYLKPSFKELLENSYKASCSQVDFA-TKPVEVIDEVNIWADVHT 143


>At3g02280.1 68416.m00209 flavodoxin family protein low similarity
           to SP|Q05001 NADPH-cytochrome P450 reductase (EC
           1.6.2.4) {Catharanthus roseus}, similar to
           NADPH-dependent FMN and FAD containing oxidoreductase
           [Homo sapiens] GI:6694369; contains Pfam profiles
           PF00258: flavodoxin, PF00667: FAD binding domain,
           PF00175: Oxidoreductase NAD-binding domain
          Length = 623

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = +3

Query: 246 GSRAEIDKFLGNGD----YSGVANPY-ISLSKTFSEMNPDYFTMANKIYVGNKYTLDE-K 407
           G+   I+K LG+      Y G  +P+ +SL +T  ++NP YF     + +     +D+ K
Sbjct: 123 GATTIIEKGLGDDQHPSGYEGTLDPWMLSLWRTLYQINPKYFPKGPDVKIPQDEVIDKPK 182

Query: 408 FTITV-RQYQSEVETIDFSD 464
           + I   +Q + E + +  SD
Sbjct: 183 YRILFHKQEKLEPKLLSDSD 202


>At1g70900.1 68414.m08181 expressed protein
          Length = 244

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +3

Query: 177 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYF 356
           K   +S +GV +   LY +     SR +  K+L   DY+ +A   I L++   E NP + 
Sbjct: 103 KVYANSLIGVGIASSLYHS-----SRGKFRKYLRWADYTMIATATICLTRALREENPKFL 157

Query: 357 TMANKI 374
             A+ +
Sbjct: 158 MAASAL 163


>At1g23110.1 68414.m02889 hypothetical protein 
          Length = 261

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 177 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYF 356
           K   +S +GV +   LY A     SR ++ K+L   DY+ +A   I LS+     NP + 
Sbjct: 120 KVYANSLIGVGIASSLYHA-----SRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFL 174

Query: 357 TMANKI 374
             A+ +
Sbjct: 175 MAASAL 180


>At5g19010.1 68418.m02258 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK16) mitogen-activated protein
           kinase (MAPK)(AtMPK16), PMID:12119167; similar to
           ATMPK9, Arabidopsis thaliana, EMBL:AB038694
          Length = 567

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 240 GEGSRAEIDKFLGNGDYSGVANPY 311
           GEGSR  I++ +G G Y  V + Y
Sbjct: 20  GEGSRYRIEEVIGKGSYGVVCSAY 43


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 229 LYRSISIITPNGEDTTFLSFDDVYVSLRN 143
           LYR+ +++ P G+D  ++S D+     RN
Sbjct: 401 LYRTNTLLIPLGDDFRYISIDEAEAQFRN 429


>At3g25140.1 68416.m03139 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 559

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +3

Query: 180 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFT 359
           +VV+  + +  + +++K    +G+  E+       DY+ + + Y+ + K     N   F 
Sbjct: 281 HVVTDKMNLGAMQVMFKLKEYKGAHVEVKAV---EDYTFLNSSYVPVLKQLESANLQKFY 337

Query: 360 MANKIYVGNKYTLDEKF 410
             NK+    K T + KF
Sbjct: 338 FENKLENATKDTTNMKF 354


>At5g35940.1 68418.m04325 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 444

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 174 DKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKT-FSEMNPD 350
           DKNV S  LG   + +L      +G +     +   GDY G+   Y++   T    M  D
Sbjct: 131 DKNVYS--LGAYFIKVLATKSGMQGGQNTGKSYDYGGDYDGIRKVYVTYDGTSIRHMRVD 188

Query: 351 Y 353
           Y
Sbjct: 189 Y 189


>At4g30550.1 68417.m04336 glutamine amidotransferase class-I
           domain-containing protein similar to defense-related
           protein [Brassica carinata] GI:14009290, component of
           aniline dioxygenase (GMP synthase like protein) -
           Acinetobacter sp.,PID:d1013698; contains Pfam profile
           PF00117: glutamine amidotransferase class-I
          Length = 249

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
 Frame = +3

Query: 39  LLAVIAVCNVRAFYSSDH--------EYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSS 194
           LLA   VCNV  F   DH        EYN+  L + +D+     L E   + K K+ + +
Sbjct: 172 LLASSEVCNVEMFSIGDHFFCIQGHPEYNKEILFEIVDRVLNMKLMEQEFADKAKSTMET 231


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 264 DKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYVGN 386
           D++L    Y     P I   KT S   P+     N++Y+GN
Sbjct: 228 DRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGN 268


>At2g20170.1 68415.m02358 hypothetical protein  and grail contains
           Pfam profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 401

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 102 RTALGDAIDKTSLQFLKETYTSSKDKNVVS 191
           RT L D I    L++L   YT+SKDK+ ++
Sbjct: 121 RTTLEDLIQIQRLKYLGVKYTTSKDKDFLN 150


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 95  VQQDSLRRCH*QNFFAVS*GNVYIIEGQECCVFTIRRDDAN 217
           V  D  RRC       V  G++Y+ E +ECC F +    AN
Sbjct: 384 VIHDERRRCE-ACIHPVQFGSIYVCEEEECC-FVLHEKCAN 422


>At3g13170.1 68416.m01647 DNA topoisomerase VIA (SPO11-1) identical
           to AtSPO11-1 [Arabidopsis thaliana] GI:13383478;
           contains Pfam profile PF04406: Type IIB DNA
           topoisomerase; identical to cDNA putative topoisomerase
           VIA (SPO11 gene 1) GI:7270974
          Length = 362

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 DAIDKTSLQFLKETYTSSKDKNVVSSP 197
           +A+   SL FL E Y  SK +  VSSP
Sbjct: 336 EALSVHSLSFLSEVYIPSKIRREVSSP 362


>At2g23990.2 68415.m02866 plastocyanin-like domain-containing
           protein 
          Length = 226

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 286 SPLPKNLSISARLPSPAPALYRSISIITPNG 194
           +P PK+ S S   P+PAPA   ++ ++  NG
Sbjct: 181 TPSPKS-STSTMAPAPAPAKSSAVGLVAGNG 210


>At2g23990.1 68415.m02865 plastocyanin-like domain-containing
           protein 
          Length = 207

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 286 SPLPKNLSISARLPSPAPALYRSISIITPNG 194
           +P PK+ S S   P+PAPA   ++ ++  NG
Sbjct: 162 TPSPKS-STSTMAPAPAPAKSSAVGLVAGNG 191


>At1g76740.1 68414.m08931 expressed protein weak similarity to
            fimbriae-associated protein Fap1 (GI:3929312)
            [Streptococcus parasanguinis]; weak similarity to 1MDa_1
            protein (GI:24620455) [Caenorhabditis elegans]
          Length = 1532

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +3

Query: 216  MLLYKAGAGEGSRAEIDKFLGNGDYSGVANPY-ISLSKTFSEMNPDYFTMANKIYVGNKY 392
            +LL  +G G     E     G  D    A P  I+  K  S + PD  T+ N +   N+ 
Sbjct: 1383 LLLNSSGGGSNVSGETSILAGTADEDEAAGPIAIAFVKAMS-LTPDELTVKNHM---NEK 1438

Query: 393  TLDEKFTITVRQYQSEVETI-DFSDTKKAADIINQWA 500
              DE+  IT        ETI + S+ +K    I++ A
Sbjct: 1439 AADEEM-ITRETTPIPEETINESSENRKEYSSIDESA 1474


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,785,264
Number of Sequences: 28952
Number of extensions: 224252
Number of successful extensions: 686
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)