Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H19
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   116   1e-28
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.81 

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  116 bits (278), Expect = 1e-28
 Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
 Frame = +2

Query: 8   PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
           P+ ++++PTRELA QI     +F  +S V+   ++GG     Q   +  G  I++ATPGR
Sbjct: 236 PVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGR 295

Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID-QIRP---DRQTLMWSATWP 355
           L DF+ +G  +     Y VLDEADRMLDMGF   + +++  Q  P   +RQTLM+SAT+P
Sbjct: 296 LKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFP 355

Query: 356 KEVRKLAEDYLGDYVQINIG 415
           +EV++LA  +L +Y+ I +G
Sbjct: 356 EEVQQLAGKFLLNYIFIAVG 375


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 48   NKYSRLLQNLAIHLMFVIHV 107
            +KYSRL+ N A    F+ HV
Sbjct: 1484 DKYSRLVNNPAARARFIKHV 1503



 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 48   NKYSRLLQNLAIHLMFVIHV 107
            +KYSRL+ N +    F+ HV
Sbjct: 1909 DKYSRLVNNPSARRRFIAHV 1928



 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 48   NKYSRLLQNLAIHLMFVIHV 107
            NKYSRL+ +      F+ HV
Sbjct: 2407 NKYSRLVNDPQARAAFIAHV 2426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,931
Number of Sequences: 336
Number of extensions: 2518
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)