Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H19
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 242 2e-65
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 161 6e-41
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 147 6e-37
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 136 2e-33
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 119 2e-28
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 100 1e-22
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 98 5e-22
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 94 8e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 93 1e-20
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 91 6e-20
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 88 7e-19
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 87 2e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 2e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 81 6e-17
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 80 2e-16
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 77 1e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 74 1e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 72 4e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 6e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 67 1e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 65 4e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 60 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 56 2e-09
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 34 0.013
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 1.1
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 27 1.4
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 2.5
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 4.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 5.8
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 242 bits (593), Expect = 2e-65
Identities = 113/154 (73%), Positives = 130/154 (84%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI LVLAPTRELA QIQQ ++FG SS +RNTCV+GG P+ Q RDL RGVEI IATP
Sbjct: 194 DGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATP 253
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRL+D L TNL+R TYLVLDEADRMLDMGFEPQIRKI+DQIRPDRQT+M+SATWPKE
Sbjct: 254 GRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKE 313
Query: 362 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
V++LA DYL DY+Q+ +GSL L+A+HNI QIV V
Sbjct: 314 VQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEV 347
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 161 bits (390), Expect = 6e-41
Identities = 80/157 (50%), Positives = 107/157 (68%), Gaps = 3/157 (1%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+GPIA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TP
Sbjct: 490 EGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTP 549
Query: 182 GRLIDFLKKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 352
GR+ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II+ IRPDRQT+++SAT+
Sbjct: 550 GRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATF 609
Query: 353 PKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
P+ + LA L V+I +G + A+ + QIV V
Sbjct: 610 PRAMEALARKVLKKPVEITVGGRSVVAS-EVEQIVEV 645
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 147 bits (357), Expect = 6e-37
Identities = 76/157 (48%), Positives = 109/157 (69%), Gaps = 5/157 (3%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P L+LAPTREL QI + + +F S+VR V+GGA R Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR----PDRQTLMWSATWP 355
L+D + +G +L +LVLDEADRMLDMGFEPQIR I++ +RQTLM+SAT+P
Sbjct: 316 LVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFP 375
Query: 356 KEVRKLAEDYLGDYVQINIGSLQLSANHNILQ-IVHV 463
++++ LA D+L DYV +++G + S + NI Q +VHV
Sbjct: 376 RDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHV 411
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 136 bits (329), Expect = 2e-33
Identities = 75/158 (47%), Positives = 100/158 (63%), Gaps = 6/158 (3%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P LV++PTRELA Q + + + ++ V+GGAPK EQAR + ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGR 295
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD------RQTLMWSAT 349
L+D + G+ + + YLVLDEADRMLD GFE IR II PD RQT+ +SAT
Sbjct: 296 LLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSAT 354
Query: 350 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
WP+ VR LA +L D V+I IGS +L+A+ NI QIV +
Sbjct: 355 WPESVRALAATFLKDPVKITIGSDELAASQNITQIVEI 392
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 119 bits (287), Expect = 2e-28
Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 19/158 (12%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
GP A+VLAPTRELAQQIQ ++F R V GG EQ+ + +G IV+ATPG
Sbjct: 325 GPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPG 384
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD-------------- 322
RL+D L++ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 385 RLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATAN 444
Query: 323 -----RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL 421
RQT+M+SAT P V LA+ YL + V + IG++
Sbjct: 445 SSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 100 bits (240), Expect = 1e-22
Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
A+VLAPTRELA QI + G S VR+ + GG QA L + +++ TPGRL+
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 194 DFLK--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 367
D L+ KG + L+ YL++DEADR+LDM F P I KI+ I +R+TL++SAT +V
Sbjct: 177 DHLENTKGFS-LKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVE 235
Query: 368 KLAEDYLGDYVQINIGS 418
KL L V++ + S
Sbjct: 236 KLQRASLHQPVRVAVSS 252
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 98.3 bits (234), Expect = 5e-22
Identities = 52/139 (37%), Positives = 78/139 (56%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
AL+LAPTRELAQQIQ+V G+ V GG R+ L+ GV +V+ TPGR+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVH 149
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D +++ VLDEAD ML GF+ QI I + P Q ++ SAT P++V ++
Sbjct: 150 DMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 374 AEDYLGDYVQINIGSLQLS 430
++ D ++I + +L+
Sbjct: 210 TTKFMRDPIRILVKKDELT 228
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 94.3 bits (224), Expect = 8e-21
Identities = 48/132 (36%), Positives = 70/132 (53%)
Frame = +2
Query: 17 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 196
L+L PTRELA Q QV G V+ GG R+ L V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 197 FLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLA 376
KG + CT V+DEAD++L F P I +++ +RQ ++SAT+P V+
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFM 235
Query: 377 EDYLGDYVQINI 412
+ +L +IN+
Sbjct: 236 DKHLNKPYEINL 247
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 93.5 bits (222), Expect = 1e-20
Identities = 49/133 (36%), Positives = 75/133 (56%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
AL+L+P RELA Q +V +F + +R+ + GG EQ L +IV+ATPGR +
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
+ L Y+V DEADR+ +MGF Q+ +I+ + RQTL++SAT P+ +
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDF 261
Query: 374 AEDYLGDYVQINI 412
A+ L D V + +
Sbjct: 262 AKAGLQDPVLVRL 274
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 91.5 bits (217), Expect = 6e-20
Identities = 56/129 (43%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+G ++++PTRELA QI VA E + V GGA +R +A L +GV +++ATP
Sbjct: 160 NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATP 219
Query: 182 GRLIDFLK--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP--DRQTLMWSAT 349
GRL+D L+ KG + LV+DEADR+L++GFE ++R+I+ +I P +RQTL++SAT
Sbjct: 220 GRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIM-KILPSENRQTLLFSAT 277
Query: 350 WPKEVRKLA 376
+V LA
Sbjct: 278 QTTKVEDLA 286
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 87.8 bits (208), Expect = 7e-19
Identities = 46/131 (35%), Positives = 72/131 (54%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
AL+L+PTRELA QIQ V G+ V+ GG + L+ G +V TPGR+
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVT 151
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D +++ + L+LDEAD +L+ GF+ QI I + P Q ++ SAT P++V ++
Sbjct: 152 DMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Query: 374 AEDYLGDYVQI 406
+ + V+I
Sbjct: 212 TNKFTTNPVRI 222
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 86.6 bits (205), Expect = 2e-18
Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 17/147 (11%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGN---SSYVRNTCVFGGAPKREQARDLERGVEIVIA 175
G A+++APTREL QQI VA++ N S ++ + V GG K+ + + +GV I+I
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIG 275
Query: 176 TPGRLIDFLKK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR------------ 316
TPGRL D L+ ++ + ++VLDE DR++DMGFE + KI+ +
Sbjct: 276 TPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSI 335
Query: 317 PDRQ-TLMWSATWPKEVRKLAEDYLGD 394
P R+ T++ SAT V++L++ L D
Sbjct: 336 PSRKVTMLCSATMKDTVKRLSDSALKD 362
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 86.2 bits (204), Expect = 2e-18
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Frame = +2
Query: 17 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 196
L+L PTRELA Q VA++ + + + GG + Q ++L + +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 197 FLKKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
++ ++ +V+DEADRML+ GF ++ +II RQT+++SAT +V L
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDL 453
Query: 374 AEDYLGDYVQINIGSLQLSANHNILQIVHV 463
L V++ + + + +A + V V
Sbjct: 454 IRLSLNRPVRVFVDNKKTTAKLLTQEFVRV 483
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 81.4 bits (192), Expect = 6e-17
Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DG ALV++PTRELA Q + + G + GG +E+ L R + I++ TP
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTP 168
Query: 182 GRLIDFLKKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
GRL+ + + + L+LDEADR+LDMGF + I+ + RQT+++SAT K
Sbjct: 169 GRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTK 228
Query: 359 EVRKLA 376
V+ LA
Sbjct: 229 SVKDLA 234
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 79.8 bits (188), Expect = 2e-16
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
G AL+L PTRELA QI + + G + +++ + GG Q+ DL + +V+ATPG
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 185 RLIDFLKKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--RPDRQTLMWSA 346
RL D ++ L+R +LV+DEADR+L F + + DRQTL+++A
Sbjct: 135 RLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTA 194
Query: 347 TWPKEVRKL 373
T +R+L
Sbjct: 195 TVTDAIRQL 203
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 77.0 bits (181), Expect = 1e-15
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P A+ LAP+RELA+QI V +E G + V+ FG K + + +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGT 240
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
++D +K+ + + VLDEAD MLD G Q +I + + Q +++SAT+ + V
Sbjct: 241 VMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERV 300
Query: 365 RKLAEDYLGDYVQINIGSLQLSANHNILQIVHVCQ 469
K AE + + +I + + +LS I Q+ CQ
Sbjct: 301 EKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQ 334
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 74.1 bits (174), Expect = 1e-14
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 190
+++L+PTRELA QI + A + + +R + GG K + + RG ++IATPGRL
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Query: 191 IDFLKKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEV 364
D L+ T +LDEADR++DMGF I I + + + + L +SAT P +V
Sbjct: 175 EDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
Query: 365 RKLAEDYLG-DYVQIN 409
+ LG D+ IN
Sbjct: 235 SNVFRGILGTDFKLIN 250
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 72.1 bits (169), Expect = 4e-14
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
ALV+APTRELA QI Q S +R + GG ++Q R L + +V+ATPGRL
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLW 254
Query: 194 DFLKKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIID----QIRPDRQTLMWSATWP 355
+ + T N ++ LVLDEADR+L ++ K+++ + RQT ++SAT+
Sbjct: 255 SVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFD 314
Query: 356 KEVRK 370
+ +++
Sbjct: 315 EGLQQ 319
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.1 bits (159), Expect = 6e-13
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Frame = +2
Query: 2 DGPIA-LVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKR---EQARDLERGVEI 166
DG ++ LVL TRELA QI+ + F VR +GG + E +D + I
Sbjct: 117 DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHI 176
Query: 167 VIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWS 343
V+ATPGRL +++ + + VLDE D++L+ + I+++ P +Q +M+S
Sbjct: 177 VVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 344 ATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQ 451
AT E+R + + ++ + ++I + H + Q
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQ 272
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 67.3 bits (157), Expect = 1e-12
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 10/122 (8%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEF---------GNSSYVRNTCVFG-GAPKREQARDLERGVE 163
AL++APTRELA QI V E G V + + G G + A E+
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 164 IVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 343
+VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ II Q+ R+T ++S
Sbjct: 135 VVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFS 192
Query: 344 AT 349
AT
Sbjct: 193 AT 194
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 65.3 bits (152), Expect = 4e-12
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGN--SSYVRNTCVFGGAPKREQARDLERGVEIVIAT 178
G AL+L PTRELAQQ+ V + S ++R V + Q L +IVIAT
Sbjct: 88 GIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIAT 147
Query: 179 PGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
P R + + G L + +LV+DEAD ML G+ ++ + + Q+ + SAT K
Sbjct: 148 PSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSK 207
Query: 359 EVRKL 373
+ L
Sbjct: 208 NIASL 212
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.5 bits (140), Expect = 1e-10
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRL 190
A+++APTREL +QI + A + + ++ + K +E+A L ++ I TP RL
Sbjct: 118 AIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 191 IDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEVR 367
+ ++ G + ++ + V+DEADR+ + GF Q I+ ++SAT P V
Sbjct: 178 VQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVE 236
Query: 368 KLAEDYLGDYVQINIG 415
+LA+ D ++I +G
Sbjct: 237 ELAKVVTVDPIRIIVG 252
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 56.4 bits (130), Expect = 2e-09
Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Frame = +2
Query: 17 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATP 181
+V+ PTREL Q+ + + + + ++ G R + L E ++++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 182 GRLIDFLKKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 313
GRL+D ++ + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 33.9 bits (74), Expect = 0.013
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Frame = +2
Query: 140 RDLERGVEIVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR 316
R L++G+E VI TP RL+ + + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 317 PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQ-----LSANHNILQIVH--VCQ 469
Q T+P +V L + LG Y Q+ + Q +N + + VH +CQ
Sbjct: 195 ESLQ------TYPDKV--LTDIELGSYQQVTLNETQTYYEDAGSNESFVARVHEIICQ 244
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 65 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---KKGTTNLQRC 232
A +FG+ S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 233 TYLVLDE 253
TY V E
Sbjct: 275 TYQVSGE 281
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 1.4
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +2
Query: 23 LAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 202
+APT+ L Q + + + + G P + + + TP +++ +
Sbjct: 122 MAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDI 180
Query: 203 KKGTTNLQRCTYLVLDEADR 262
K G + R + LV+DEA R
Sbjct: 181 KHGICDRTRISCLVIDEAHR 200
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 2.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 80 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLKKGTTNLQRC 232
NS+YV+++C + K+ Q EIVIAT RL+ + T C
Sbjct: 16 NSNYVQSSCAASLSGKKAQ--------EIVIATESRLLIYKVDATDGRMNC 58
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 269 DMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 394
D+GFE R+I D L+ P+E L +D + D
Sbjct: 157 DVGFEKPSREIFDYAMEKAVKLLGQEIQPEECMHLGDDLIKD 198
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLE 151
PI ++ +P E+ ++V + Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 5.8
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -3
Query: 375 ASFLTSFG--HVADHIRVCLSGRIWSIIFLICGSKPISNMRSASSRTK*VHLCKFVVPFF 202
AS + SFG + ++ R S+ F + SK + S++ V+ + F+
Sbjct: 162 ASCVFSFGVRFLWQYLSAIAGKRARSLCFHVLSSKSSTFYSLTESKSGLVNSVDRCIQFY 221
Query: 201 KKSINLPGVAITISTPLSKS 142
+KSI+LP I + +S S
Sbjct: 222 EKSISLPMFHIAENLAISLS 241
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -2
Query: 400 DIVS*IILCKFPYFFWPCCRP--HKSLPIRAYL 308
+IVS CKF + F P C P PIR L
Sbjct: 151 NIVSITEQCKFSFLFAPMCHPTLKNVAPIRKQL 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,366
Number of Sequences: 5004
Number of extensions: 39737
Number of successful extensions: 173
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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