Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H19
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 248 2e-66
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 2e-35
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 4e-34
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 3e-29
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 4e-29
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 6e-27
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 103 7e-23
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 5e-21
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 97 9e-21
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 95 3e-20
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 95 3e-20
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 93 1e-19
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 93 1e-19
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 4e-19
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 76 1e-14
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 76 2e-14
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 71 4e-13
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 71 4e-13
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 68 3e-12
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 68 3e-12
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 66 1e-11
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 60 1e-09
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 55 3e-08
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 55 3e-08
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 52 2e-07
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 52 2e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 49 2e-06
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 43 1e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 41 6e-04
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.052
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 31 0.36
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 30 1.1
SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 29 1.9
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 27 5.9
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06) 27 7.8
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 248 bits (606), Expect = 2e-66
Identities = 116/156 (74%), Positives = 130/156 (83%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI LVL PTRELAQQ+Q+VA G +R+TC++GGAPK Q R+LERGVEI IATP
Sbjct: 131 DGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIATP 190
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRLID L+ TNL+RCTYLVLDEADRMLDMGFEPQIR IIDQIRPDRQTLMWSATWPKE
Sbjct: 191 GRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWSATWPKE 250
Query: 362 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVHVCQ 469
V+ LA D+L DYV I +GSL L+ANH ILQIV VC+
Sbjct: 251 VQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCE 286
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 145 bits (351), Expect = 2e-35
Identities = 76/146 (52%), Positives = 97/146 (66%), Gaps = 11/146 (7%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 190
IA+V+ PTRELA QI + +F + +R CV+GG EQ +L+RG EI++ TPGR+
Sbjct: 146 IAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTPGRM 205
Query: 191 IDFLKKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRK--------IIDQIRPDRQTLM 337
ID L TN QRCTYLVLDEADRM DMGFEPQI K IID IRPDRQT+M
Sbjct: 206 IDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKVMRIIDCIRPDRQTVM 265
Query: 338 WSATWPKEVRKLAEDYLGDYVQINIG 415
+SAT+P+++ LA L ++I +G
Sbjct: 266 FSATFPRQMEALARKILDKPIEIQVG 291
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 140 bits (340), Expect = 4e-34
Identities = 65/140 (46%), Positives = 98/140 (70%), Gaps = 4/140 (2%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P A+ +APTRELA QI A +F + + +R +GG Q R L+ G +++ TPGR
Sbjct: 789 PQAMCIAPTRELANQIYLEARKFAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGTPGR 848
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 355
L DF++KG +L+ +L+LDEADRMLDMGFEP IR+I++ + + +RQTLM+SAT+P
Sbjct: 849 LTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSERQTLMFSATFP 908
Query: 356 KEVRKLAEDYLGDYVQINIG 415
+E+++LA D+L DY+ + +G
Sbjct: 909 EEIQRLAGDFLNDYLFLTVG 928
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 124 bits (300), Expect = 3e-29
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 4/133 (3%)
Frame = +2
Query: 71 EFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLKKGTTNLQRCTYLVLD 250
+F S R V+GGA Q R+L+R +++ATPGRL+D + +G L +LVLD
Sbjct: 947 DFSYRSLCRPCVVYGGADIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLD 1006
Query: 251 EADRMLDMGFEPQIRKIIDQ-IRPD---RQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 418
EADRMLDMGFEPQIR+I+DQ P RQTLM+SAT+PKE++ LA D+L +Y+ + +G
Sbjct: 1007 EADRMLDMGFEPQIRRIVDQDSMPKTGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGK 1066
Query: 419 LQLSANHNILQIV 457
+ S + NI Q V
Sbjct: 1067 VG-STSENITQKV 1078
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 124 bits (299), Expect = 4e-29
Identities = 70/140 (50%), Positives = 84/140 (60%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI L+ APTREL QQI A FG + + VFGG K EQ++ L+ G EIV+ATP
Sbjct: 589 DGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVATP 648
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRLID +K TNL R TYLV DEADRM DMGF L++SAT+ K+
Sbjct: 649 GRLIDHVKAKATNLHRVTYLVFDEADRMFDMGF----------------ALLFSATFKKK 692
Query: 362 VRKLAEDYLGDYVQINIGSL 421
V L D L D V++ IG L
Sbjct: 693 VEHLCRDILVDPVRVVIGEL 712
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 117 bits (281), Expect = 6e-27
Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 5/141 (3%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P+AL +APTRELA+QI A +F + + ++ +GG QA LERG ++ TPGR
Sbjct: 553 PLALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYGGVSVPYQASQLERGCHFLVGTPGR 612
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQ----IRPDRQTLMWSATWP 355
L DF+ + L +L+LDEADRMLD+GF P I K+I++ + RQTLM+SAT+P
Sbjct: 613 LQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMTAKESRQTLMFSATFP 672
Query: 356 KEVRKLAEDYL-GDYVQINIG 415
E++ LA +L DY+ + +G
Sbjct: 673 DEIQHLAGSFLKPDYLFLAVG 693
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 109 bits (261), Expect = 2e-24
Identities = 55/131 (41%), Positives = 77/131 (58%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
ALVLAPTRELAQQIQ+V G+ +V+ GG RE LE GV +V+ TPGR+
Sbjct: 162 ALVLAPTRELAQQIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVF 221
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D + +G N + VLDEAD ML GF+ QI + ++ Q ++ SAT P +V ++
Sbjct: 222 DMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLLSATMPTDVLEV 281
Query: 374 AEDYLGDYVQI 406
++ D V+I
Sbjct: 282 TNKFMRDVVRI 292
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 103 bits (247), Expect = 7e-23
Identities = 54/133 (40%), Positives = 85/133 (63%), Gaps = 6/133 (4%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
P LV+APTRELA+Q V +EF N S + C++GG P Q + G+++++ TPG
Sbjct: 148 PKVLVMAPTRELAKQ---VGNEFENLKSNLEVYCIYGGMPYEPQENAINSGLDVLVGTPG 204
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII----DQIRPDR-QTLMWSAT 349
R++DF+++GT +L + ++VLDE DRMLDMGF + +++ + R D+ QTL++SAT
Sbjct: 205 RILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAEDREDKPQTLLFSAT 264
Query: 350 WPKEVRKLAEDYL 388
P A+ Y+
Sbjct: 265 LPPWAVNTAKKYM 277
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 97.5 bits (232), Expect = 5e-21
Identities = 52/133 (39%), Positives = 75/133 (56%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P ALVL+PTRELA QIQ+V G+ V+ GG E R L+ G IV TPGR
Sbjct: 66 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGR 125
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 367
+ D +++ + LVLDEAD ML+ GF+ QI + + P Q ++ SAT P E+
Sbjct: 126 VFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEIL 185
Query: 368 KLAEDYLGDYVQI 406
++ ++ D ++I
Sbjct: 186 EMTSKFMTDPIRI 198
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 96.7 bits (230), Expect = 9e-21
Identities = 61/137 (44%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAP-KREQARDLERGVEIVIAT 178
DG ALV++PTRELA Q +V + GN + + GG K EQ R ++ IV+ T
Sbjct: 121 DGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRIMK--TNIVVCT 178
Query: 179 PGRLIDFLKKGTTNLQRCT---YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 349
PGRL+ + + T N CT LVLDEADR+LDMGF P + II+ + +RQTL++SAT
Sbjct: 179 PGRLLQHMDE-TPNFD-CTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTLLYSAT 236
Query: 350 WPKEVRKLAEDYLGDYV 400
+ V+ LA L YV
Sbjct: 237 QTRSVKDLARLSLQSYV 253
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 95.1 bits (226), Expect = 3e-20
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERG-------VEIVI 172
ALVL PTRELA Q Q+ E G + GG ++ L V +++
Sbjct: 118 ALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVVHVIV 177
Query: 173 ATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 352
ATPGR++D +KK ++ +C LV+DEAD++L M F+ + +II + +RQ L++SAT+
Sbjct: 178 ATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATF 237
Query: 353 PKEVRKLAEDYLGDYVQINI 412
P VR E +L +IN+
Sbjct: 238 PISVRDFKEKHLRKPYEINL 257
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 95.1 bits (226), Expect = 3e-20
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERG-------VEIVI 172
ALVL PTRELA Q Q+ E G + GG ++ L V +++
Sbjct: 118 ALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVVHVIV 177
Query: 173 ATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 352
ATPGR++D +KK ++ +C LV+DEAD++L M F+ + +II + +RQ L++SAT+
Sbjct: 178 ATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATF 237
Query: 353 PKEVRKLAEDYLGDYVQINI 412
P VR E +L +IN+
Sbjct: 238 PISVRDFKEKHLRKPYEINL 257
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 92.7 bits (220), Expect = 1e-19
Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
G A+VL PTRELA QI G ++ + GG +QA L +VIATPG
Sbjct: 75 GIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANKPHVVIATPG 134
Query: 185 RLIDFLKK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK- 358
RL D +K T NL++ +LVLDEADR+LD F ++ I D + RQTL++SAT
Sbjct: 135 RLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSATLTDT 194
Query: 359 --EVRKLAEDYLGDY-VQINIGSLQLSANHNILQIVHV 463
E++K++ Y VQ +I ++ +L HV
Sbjct: 195 MGELQKMSGSQPFSYEVQSDIATVAELDQRYLLTPAHV 232
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 92.7 bits (220), Expect = 1e-19
Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 28/181 (15%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEF------------GNSSYVRNT----------CVFG 115
D P+AL+L PTREL QQ+ SE N S + +T V G
Sbjct: 144 DTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPGPSNQSVIYDTQQFTARYKAVAVCG 203
Query: 116 GAPKREQARDLERGVEIVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 295
G P Q L G ++V+ATPGRL+D L + TYLV+DE DRML MG E Q+R
Sbjct: 204 GVPVSTQTIALREGADVVVATPGRLLD--------LYKITYLVMDEPDRMLGMGMEEQLR 255
Query: 296 KIIDQIRPD---RQTLMWSATWPKEVRKLAEDYLGDYVQINIGS---LQLSANHNILQIV 457
KI+ RQTL+WSAT P+ + +LA + + + I +G + S N++ +
Sbjct: 256 KIVGLATGTSRARQTLLWSATLPESLERLARSAVLNPITIQVGPGGLIAPSVQQNVVFLY 315
Query: 458 H 460
H
Sbjct: 316 H 316
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 91.1 bits (216), Expect = 4e-19
Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+G ++++PTREL+ Q VA + + GG ++ +A L++GV ++IATP
Sbjct: 643 NGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKGVNLLIATP 702
Query: 182 GRLIDFLKKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
GRL+D L+ L + LV+DEADR+L++GFE ++R+II + RQT+++SAT K
Sbjct: 703 GRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTVLFSATQTK 762
Query: 359 EVRKLAE 379
V LA+
Sbjct: 763 NVEDLAK 769
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/93 (36%), Positives = 59/93 (63%)
Frame = +2
Query: 149 ERGVEIVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 328
E GV++++ATPGR+++ + + +L V+DE D ML +GFE Q+++I++++ RQ
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQ 312
Query: 329 TLMWSATWPKEVRKLAEDYLGDYVQINIGSLQL 427
T+++SAT P + +A L V I+ GS L
Sbjct: 313 TMLFSATIPPSIEAMASRLLNAPVFISAGSPSL 345
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 75.8 bits (178), Expect = 2e-14
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
AL+L PTRELA QI + G+ V+ + GG QA L + I+IATPGRLI
Sbjct: 35 ALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLI 94
Query: 194 DFLK--KGTTNLQRCTYLVLDEADRMLDMGFEPQ 289
D L+ KG +L+ YLV+DEADR+L+M FE +
Sbjct: 95 DHLENTKG-FSLRTLKYLVMDEADRILNMDFEKE 127
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 71.3 bits (167), Expect = 4e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Frame = +2
Query: 218 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDY 397
N+ YLVLDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKP 72
Query: 398 VQINIGSLQLSANHNILQIV 457
V +N+G +A+ +++Q++
Sbjct: 73 VTVNVGRAG-AASLDVIQVL 91
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 71.3 bits (167), Expect = 4e-13
Identities = 34/80 (42%), Positives = 53/80 (66%)
Frame = +2
Query: 218 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDY 397
N+ YLVLDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKP 72
Query: 398 VQINIGSLQLSANHNILQIV 457
V +N+G +A+ +++Q++
Sbjct: 73 VTVNVGRAG-AASLDVIQVL 91
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +2
Query: 272 MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLS 430
MGFEP+I+KI+ IRPDRQT+M SATWP V+++A+ Y+ D V++ +G L L+
Sbjct: 1 MGFEPEIKKILLDIRPDRQTVMTSATWPPGVQRMADQYMTDPVRVFVGCLDLN 53
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 68.1 bits (159), Expect = 3e-12
Identities = 35/102 (34%), Positives = 56/102 (54%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P A ++ P RELA QI + A + + R+ + GG ++ DLE V++++ATPG
Sbjct: 456 PRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGRKQKWMRDDLESPVDLLVATPGT 515
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 313
L+ + +K T+LV+DEAD M D F+ +I+ I
Sbjct: 516 LLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILHTI 557
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 68.1 bits (159), Expect = 3e-12
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Frame = +2
Query: 17 LVLAPTRELAQQIQQVASEFGNSSYVRNTC-VFGGAPKREQARDLERGVEIVIATPGRLI 193
++L PTRE+A Q++ V G Y C VF G E+ + + I + TPGR+
Sbjct: 85 IILTPTREIAVQVKDVICAIG-CHYDGLACKVFIGGISLEEDKKALKSCHIAVGTPGRVK 143
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
+++ + +LDEAD++LD F+ QI I + ++Q + +SAT+P+ +
Sbjct: 144 YLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQMMAFSATYPEVLANH 203
Query: 374 AEDYLGD--YVQIN 409
+ Y+ + +V++N
Sbjct: 204 LKKYMTEPTFVRLN 217
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 66.1 bits (154), Expect = 1e-11
Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFG-NSSYVR-NTCVFGGA-PKREQARDLERGVEIVIAT 178
P + L+PT ELA+Q +VA G + +++ N V G P+ ++ D I+I T
Sbjct: 174 PQVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRGNQFPRGQKCTD-----HIIIGT 228
Query: 179 PGRLIDFLKKGTT-NLQRCTYLVLDEADRMLDM-GFEPQIRKIIDQIRPDRQTLMWSATW 352
PG L+D+++K ++ + VLDEAD M+ + G + Q +I + D Q L++SAT+
Sbjct: 229 PGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQVLLFSATY 288
Query: 353 PKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVHVCQ 469
++V K AE + + + I + + S + NI Q VC+
Sbjct: 289 DEDVMKFAETVVPNPIIIRLRREEESLD-NIKQYYVVCK 326
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/71 (42%), Positives = 50/71 (70%)
Frame = +2
Query: 239 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 418
LVLDEADRMLDMGF IR+++ ++ RQ L++SAT+ +++ LAE L + ++I + +
Sbjct: 7 LVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEV-A 65
Query: 419 LQLSANHNILQ 451
+ +A+ +LQ
Sbjct: 66 RRNTASDQVLQ 76
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 54.8 bits (126), Expect = 3e-08
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVR-NTCVFGGAPKREQARDLERGVEIVIATPGRL 190
A+V++PTRELAQQI + R + A + +I++ TP RL
Sbjct: 208 AVVVSPTRELAQQIYREFCHLAKGCAFRIHVLTKANASTNTFGAKSSKRFDILVTTPNRL 267
Query: 191 IDFLKKGT--TNLQRCTYLVLDEADRMLDM---GFEPQIRKIIDQI-RPDRQTLMWSATW 352
+ L + L +L+LDEAD++ + GF QI I +PD ++SAT
Sbjct: 268 VHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDIHRGLFSATL 327
Query: 353 PKEVRKLAEDYLGDYVQINIG 415
+ + A +L ++V++ +G
Sbjct: 328 SNGIEEWAGLHLDNHVRVTVG 348
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 54.8 bits (126), Expect = 3e-08
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +2
Query: 2 DGPIA-LVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFGGAPKREQARDLERGV-EIVI 172
DG ++ LV+ TRELA QI + F S ++ FGG ++ + L+ IV+
Sbjct: 113 DGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVV 172
Query: 173 ATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLD 271
TPGR++ ++ T NL+ + +LDE D+ML+
Sbjct: 173 GTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 54.8 bits (126), Expect = 3e-08
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +2
Query: 2 DGPIA-LVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFGGAPKREQARDLERGV-EIVI 172
DG ++ LV+ TRELA QI + F S ++ FGG ++ + L+ IV+
Sbjct: 113 DGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVV 172
Query: 173 ATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLD 271
TPGR++ ++ T NL+ + +LDE D+ML+
Sbjct: 173 GTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 52.4 bits (120), Expect = 2e-07
Identities = 42/128 (32%), Positives = 67/128 (52%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
GP AL+LAPTRELAQQI++ +FG +R V GGA R ++ G E +
Sbjct: 178 GPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGAD-----RMIDMGFEPEVQ--- 229
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
++++ L +N++ + D + MG + RQT+M++AT P +V
Sbjct: 230 KILEHLP--VSNVKPDSEDSEDPEHLLTHMGKDKY-----------RQTVMFTATMPPQV 276
Query: 365 RKLAEDYL 388
+LA++YL
Sbjct: 277 ERLAKNYL 284
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/61 (47%), Positives = 35/61 (57%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P ALVL+PTRELA QIQ+V G+ V+ GG E R L+ G IV TPGR
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGR 63
Query: 188 L 190
+
Sbjct: 64 V 64
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 50.8 bits (116), Expect = 6e-07
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 190
+AL++APTRELA Q++ + + V+ + GG +Q R L++ EIV+ATPGRL
Sbjct: 220 LALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRL 279
Query: 191 IDFLKKGTTN 220
+ + + T+
Sbjct: 280 WELISQVFTH 289
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 158 VEIVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 313
V +V+ + +K +N+Q YLV+DEADRM++ G ++ I++ I
Sbjct: 316 VVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEF-GNSSYVRNTCVFGGAPKREQARDLERGVEIVIAT 178
+GP+ L+L + ++ V + N R +FGG + ++ L G E+++AT
Sbjct: 262 NGPLVLILCTNWQNTARVYGVCEDLIRNRRRTRVQMIFGGGAEEDRIVPLINGCEVLVAT 321
Query: 179 PGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 295
P + LK+ T+L R ++V D+AD ML F +I+
Sbjct: 322 PPCFLRMLKRCYTSLDRLCHVVFDDAD-MLAEYFTAEIK 359
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/83 (34%), Positives = 44/83 (53%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
AL+L+PTRELA Q Q+ E G + ++++ + GG + V+ATPGR +
Sbjct: 354 ALILSPTRELALQTQKFIKELGRFTGLKSSVILGG--------------DSVVATPGRFL 399
Query: 194 DFLKKGTTNLQRCTYLVLDEADR 262
+ + L Y+V DEADR
Sbjct: 400 HVVMEMELKLSSVEYVVFDEADR 422
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +2
Query: 158 VEIVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 313
V+IV TPG+L DF+ +L + + +LDEAD +L G I KI ++I
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 40.7 bits (91), Expect = 6e-04
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 17 LVLAPTRELAQQ-IQQVASEFGNSSYVRNTCVFGGAPKREQA-RDLERGVEIVIATPGRL 190
+++ PTRELA Q + +V+ G+ S V + ++E+ +D IVI TP RL
Sbjct: 229 IIVVPTRELASQMLYEVSRLLGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRL 288
Query: 191 IDFLKKGTTNLQRCTYLVLDEADRML 268
+ +++ QR +V+DE D+ L
Sbjct: 289 WEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 98 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLKKG 211
+ C+ GG RE LE GV +V+ TPGR+ D + +G
Sbjct: 6 HACI-GGTNVREDRMKLEEGVHVVVGTPGRVFDMINRG 42
>SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 215 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 313
+N+Q YLV+DEADRM++ G ++ I++ I
Sbjct: 6 SNVQLLRYLVIDEADRMVEQGHYEELSSILELI 38
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 143 DLERGVEIVIATPGRLIDFL 202
+L+RG EI++ TPGR+ID L
Sbjct: 3 ELKRGAEIIVCTPGRMIDML 22
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 31.5 bits (68), Expect = 0.36
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 239 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 328
LVLDEAD ML+ GF+ QI + + P Q
Sbjct: 39 LVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 272 MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINI 412
MGFE I I+ + R+T ++SAT EV L L + V++ +
Sbjct: 1 MGFEASINTILGYLPKQRRTGLFSATQTDEVEALVRAGLRNPVRVTV 47
>SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Frame = +2
Query: 212 TTNLQRCTYLVLDEAD----RMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 379
TT LQ Y L E D + + P I K+++ + W TW K KL
Sbjct: 235 TTVLQVMGYEQLKEGDLVAVNVANYDKIPCISKVVELRDQEFVIKWWKGTWLKSWEKLPS 294
Query: 380 DYLGDYVQINIGSLQLSANHNIL 448
Y G+ + G +HN+L
Sbjct: 295 QYAGNSCVLFRGQYCQYRSHNLL 317
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 221 LQRCTYLVLDEADRMLDMGFEPQIRKII 304
LQRC LVLDEA +D + Q++++I
Sbjct: 1219 LQRCKVLVLDEATANVDYRTDRQVQQLI 1246
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 221 LQRCTYLVLDEADRMLDMGFEPQIRKII 304
LQRC LVLDEA +D + Q++++I
Sbjct: 984 LQRCKVLVLDEATANVDYRTDRQVQQLI 1011
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +3
Query: 270 IWVLSHKLGKLSTKYALIG 326
+WVL HK+G ++T++ ++G
Sbjct: 1840 LWVLIHKVGVMATRFCVLG 1858
>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 155 LFPNHGPVLF*GHLQTHMYYEHKMNCQILKQPAVFVEQV 39
L P HG + H + +Y+ + + Q+LK+ VF+E+V
Sbjct: 67 LTPEHGVLNGIRHWVDNHFYDFERDAQLLKKLQVFLEEV 105
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 27.5 bits (58), Expect = 5.9
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +2
Query: 23 LAPTREL-AQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDF 199
+APT+ L AQQI+ G +T G + +L R + TP L +
Sbjct: 163 MAPTKPLVAQQIEACYKIMGIPQ--TDTAEMTGNMAPTKRENLWRTKRVFFLTPQVLQND 220
Query: 200 LKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 379
L +G+ LV+DEA + L Q+ + I + + L SAT +++ + +
Sbjct: 221 LSRGSCAAADVVLLVVDEAHKALGNHSYCQVVREILSYTTNFRVLALSATPGDDIKAVQQ 280
>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 331 SYVVCNMAKRSKETCRGLFRRLCPN*YWITSTICKS 438
SY+VC + CR + RL N + T+C+S
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSAN---RSKTVCRS 462
>SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)
Length = 368
Score = 27.1 bits (57), Expect = 7.8
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 164 IVIATPGRLIDFLKKGTTNLQRCTYLVLDEA-DRMLDMGFEPQIRKIIDQIRPDRQTLMW 340
++ T G L+ + + +T L +++V+DE +R + F + + + RPD + ++
Sbjct: 72 LLYCTTGILLRYFESDST-LAGVSHVVVDEVHERTEESDFLMMVLRDLIMERPDLRVILM 130
Query: 341 SATWPKEVRKLAEDYLGDYVQINI 412
SAT KL +Y D I+I
Sbjct: 131 SATLDS---KLFSEYFYDAPVIHI 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,018
Number of Sequences: 59808
Number of extensions: 295983
Number of successful extensions: 724
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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