Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H19
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 219 6e-58
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 217 3e-57
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 217 3e-57
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 190 3e-49
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 187 3e-48
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 187 3e-48
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 187 3e-48
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 185 1e-47
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 169 8e-43
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 154 2e-38
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 154 3e-38
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 153 6e-38
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 152 1e-37
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 147 3e-36
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 145 1e-35
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 145 1e-35
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 124 3e-29
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 124 4e-29
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 122 2e-28
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 120 7e-28
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 119 9e-28
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 117 5e-27
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 101 2e-22
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 101 3e-22
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 101 3e-22
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 101 3e-22
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 100 6e-22
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 100 6e-22
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 100 1e-21
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 99 1e-21
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 99 1e-21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 98 3e-21
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 97 5e-21
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 97 7e-21
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 94 5e-20
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 93 1e-19
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 93 1e-19
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 88 2e-18
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 88 2e-18
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 88 2e-18
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 87 4e-18
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 87 6e-18
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 85 2e-17
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 85 2e-17
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 83 7e-17
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 83 9e-17
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 82 2e-16
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 80 6e-16
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 79 1e-15
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 76 1e-14
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 76 1e-14
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 71 3e-13
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 71 4e-13
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 71 4e-13
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 71 4e-13
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 71 5e-13
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 69 2e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 64 3e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 58 3e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 1e-08
At2g28600.1 68415.m03476 expressed protein 54 4e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 3e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 2e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 8e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.006
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 29 1.2
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 29 2.1
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 2.1
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 4.8
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 27 4.8
At1g63940.4 68414.m07242 monodehydroascorbate reductase, putativ... 27 6.4
At1g63940.3 68414.m07239 monodehydroascorbate reductase, putativ... 27 6.4
At1g63940.2 68414.m07240 monodehydroascorbate reductase, putativ... 27 6.4
At1g63940.1 68414.m07241 monodehydroascorbate reductase, putativ... 27 6.4
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 27 8.5
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 27 8.5
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 27 8.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 219 bits (536), Expect = 6e-58
Identities = 104/154 (67%), Positives = 124/154 (80%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI LVLAPTRELA QIQQ AS+FG+SS ++ TC++GG PK Q RDL++GVEIVIATP
Sbjct: 171 DGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATP 230
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRLID ++ TNL+R TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATWPKE
Sbjct: 231 GRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKE 290
Query: 362 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
V +L++ +L + ++ IGS L AN I QIV V
Sbjct: 291 VEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDV 324
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 217 bits (530), Expect = 3e-57
Identities = 104/154 (67%), Positives = 122/154 (79%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI L+LAPTRELA QIQ+ + +FG S VR+TC++GGAPK Q RDL RGVEIVIATP
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATP 296
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRLID L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+E
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPRE 356
Query: 362 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
V LA +L D + IGS L AN +I Q++ +
Sbjct: 357 VETLARQFLRDPYKAIIGSTDLKANQSINQVIEI 390
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 217 bits (530), Expect = 3e-57
Identities = 104/154 (67%), Positives = 122/154 (79%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI L+LAPTRELA QIQ+ + +FG S VR+TC++GGAPK Q RDL RGVEIVIATP
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATP 296
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRLID L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+E
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPRE 356
Query: 362 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
V LA +L D + IGS L AN +I Q++ +
Sbjct: 357 VETLARQFLRDPYKAIIGSTDLKANQSINQVIEI 390
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 190 bits (464), Expect = 3e-49
Identities = 94/155 (60%), Positives = 118/155 (76%), Gaps = 1/155 (0%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+GP L+LAPTRELA QIQ A FG SS + TC++GGAPK Q ++LERG +IV+ATP
Sbjct: 506 NGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATP 565
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRL D L+ + Q+ + LVLDEADRMLDMGFEPQIRKI+++I P RQTLM++ATWPKE
Sbjct: 566 GRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKE 625
Query: 362 VRKLAEDYLGDYVQINIGSL-QLSANHNILQIVHV 463
VRK+A D L + VQ+NIG + +L+AN I Q V V
Sbjct: 626 VRKIASDLLVNPVQVNIGRVDELAANKAITQYVEV 660
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 187 bits (456), Expect = 3e-48
Identities = 93/154 (60%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
GP LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
RL D L+ +L++ +YLVLDEADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK V
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV 349
Query: 365 RKLAEDYLGDYVQINIGSL-QLSANHNILQIVHV 463
RK+A D L + Q+NIG++ +L AN +I Q + V
Sbjct: 350 RKIAADLLVNPAQVNIGNVDELVANKSITQHIEV 383
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 187 bits (456), Expect = 3e-48
Identities = 93/154 (60%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
GP LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
RL D L+ +L++ +YLVLDEADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK V
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV 349
Query: 365 RKLAEDYLGDYVQINIGSL-QLSANHNILQIVHV 463
RK+A D L + Q+NIG++ +L AN +I Q + V
Sbjct: 350 RKIAADLLVNPAQVNIGNVDELVANKSITQHIEV 383
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 187 bits (456), Expect = 3e-48
Identities = 93/154 (60%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
GP LVL+PTRELA QIQ+ A +FG SS + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
RL D L+ +L++ +YLVLDEADRMLDMGFEPQIRKI+ +I RQTLM++ATWPK V
Sbjct: 290 RLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGV 349
Query: 365 RKLAEDYLGDYVQINIGSL-QLSANHNILQIVHV 463
RK+A D L + Q+NIG++ +L AN +I Q + V
Sbjct: 350 RKIAADLLVNPAQVNIGNVDELVANKSITQHIEV 383
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 185 bits (451), Expect = 1e-47
Identities = 90/154 (58%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
GP LVL+PTRELA QIQ A +FG SS + C++GGAPK Q +++ERGV+IV+ATPG
Sbjct: 301 GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPG 360
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
RL D L+ +L + +YLVLDEADRMLDMGFEPQIRKI++++ RQTLM++ATWPKEV
Sbjct: 361 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420
Query: 365 RKLAEDYLGDYVQINIGSL-QLSANHNILQIVHV 463
RK+A D L + Q+NIG++ +L AN +I Q + V
Sbjct: 421 RKIAADLLVNPAQVNIGNVDELVANKSITQTIEV 454
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 169 bits (411), Expect = 8e-43
Identities = 81/154 (52%), Positives = 111/154 (72%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+GPI ++ APTRELA QI A +F + +R + V+GG K EQ ++L+ G EIV+ATP
Sbjct: 300 EGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATP 359
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
GRLID LK + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +
Sbjct: 360 GRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWK 419
Query: 362 VRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
V KLA + L D +++ +G + + AN +I Q+V+V
Sbjct: 420 VEKLAREILSDPIRVTVGEVGM-ANEDITQVVNV 452
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 154 bits (374), Expect = 2e-38
Identities = 79/157 (50%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI LV+APTREL QQI +F +R V+GG+ +Q +L+RG EIV+ TP
Sbjct: 601 DGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTP 660
Query: 182 GRLIDFLKKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 352
GR+ID L + TNL+R T+LV+DEADRM DMGFEPQI +II IRP+RQT+++SAT+
Sbjct: 661 GRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATF 720
Query: 353 PKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
P++V LA L V+I +G + N +I Q+V V
Sbjct: 721 PRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEV 756
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 154 bits (373), Expect = 3e-38
Identities = 78/157 (49%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DGPI LV+APTREL QQI +F + + V+GG+ +Q +L+RG EIV+ TP
Sbjct: 468 DGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTP 527
Query: 182 GRLIDFLKKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATW 352
GR+ID L + TNL+R TYLV+DEADRM DMGFEPQI +I+ IRPDRQT+++SAT+
Sbjct: 528 GRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 587
Query: 353 PKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVHV 463
P++V LA L V+I +G + N +I Q+V +
Sbjct: 588 PRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEI 623
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 153 bits (371), Expect = 6e-38
Identities = 72/147 (48%), Positives = 107/147 (72%), Gaps = 4/147 (2%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P+A++L+PTRELA QI A +F + V+ +GG P +Q R+LERGV+I++ATPGR
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 297
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 355
L D L++ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQTL++SAT+P
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFP 357
Query: 356 KEVRKLAEDYLGDYVQINIGSLQLSAN 436
+E+++LA D+L +Y+ + +G + S +
Sbjct: 358 REIQRLAADFLANYIFLAVGRVGSSTD 384
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 152 bits (369), Expect = 1e-37
Identities = 73/147 (49%), Positives = 107/147 (72%), Gaps = 4/147 (2%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P+A++L+PTRELA QI A +F + V+ +GG P +Q R+LERGV+I++ATPGR
Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGR 284
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI-RPD---RQTLMWSATWP 355
L D L++G +LQ +L LDEADRMLDMGFEPQIRKI+ Q+ P RQT+++SAT+P
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 344
Query: 356 KEVRKLAEDYLGDYVQINIGSLQLSAN 436
+E+++LA D+L +Y+ + +G + S +
Sbjct: 345 REIQRLASDFLSNYIFLAVGRVGSSTD 371
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 147 bits (357), Expect = 3e-36
Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P LVL+PTRELA QI V E G +++ CV+GG+ K Q + GV+IVI TPGR
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGR 251
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 367
L D ++ L +++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +V
Sbjct: 252 LRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVH 311
Query: 368 KLAEDYLG-DYVQINIGSLQLSANHNILQIVHV 463
KLA++++ + +++ IGS+ L+ANH+++QI+ V
Sbjct: 312 KLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEV 344
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 145 bits (352), Expect = 1e-35
Identities = 68/147 (46%), Positives = 104/147 (70%), Gaps = 4/147 (2%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P A++L+PTRELA QI A +F + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 355
L D L++ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 356 KEVRKLAEDYLGDYVQINIGSLQLSAN 436
++++LA D++ +Y+ + +G + S +
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVGSSTD 376
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 145 bits (352), Expect = 1e-35
Identities = 68/147 (46%), Positives = 104/147 (70%), Gaps = 4/147 (2%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P A++L+PTRELA QI A +F + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWP 355
L D L++ ++Q +L LDEADRMLDMGFEPQIRKI++Q+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 356 KEVRKLAEDYLGDYVQINIGSLQLSAN 436
++++LA D++ +Y+ + +G + S +
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVGSSTD 376
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 124 bits (299), Expect = 3e-29
Identities = 70/156 (44%), Positives = 96/156 (61%), Gaps = 17/156 (10%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+GP A+V+APTRELAQQI++ +F + R T + GG EQ + +G EIVIATP
Sbjct: 388 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATP 447
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID-----QIRPD-------- 322
GRLID L++ L +C Y+VLDEADRM+DMGFEPQ+ ++D ++P+
Sbjct: 448 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDE 507
Query: 323 ----RQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 418
R T M+SAT P V +LA YL + V + IG+
Sbjct: 508 KKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT 543
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 124 bits (298), Expect = 4e-29
Identities = 66/158 (41%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFG----NSSY--VRNTCVFGGAPKREQARDLERGVE 163
+GPI L++ P+RELA+Q +V +F + Y +R+ GG R Q ++RGV
Sbjct: 221 EGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVH 280
Query: 164 IVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 343
IV+ATPGRL D L K +L C YL LDEADR++D+GFE IR++ D + RQTL++S
Sbjct: 281 IVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFS 340
Query: 344 ATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIV 457
AT P +++ A L V +N+G +AN +++Q V
Sbjct: 341 ATMPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQEV 377
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 122 bits (293), Expect = 2e-28
Identities = 57/136 (41%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 184
P+ LVLAPTRELA+Q+++ EF S+ +T C++GG P +Q R L+ GV++ + TPG
Sbjct: 179 PLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPG 235
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
R+ID +K+G NL ++VLDEAD+ML +GF + I++++ RQ++M+SAT P +
Sbjct: 236 RVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWI 295
Query: 365 RKLAEDYLGDYVQINI 412
R L + YL + + +++
Sbjct: 296 RSLTKKYLNNPLTVDL 311
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 120 bits (288), Expect = 7e-28
Identities = 67/158 (42%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNS----SY--VRNTCVFGGAPKREQARDLERGVE 163
+GPIALV+ P+RELA+Q V +F S Y +R+ GG R Q +++GV
Sbjct: 172 EGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVH 231
Query: 164 IVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 343
IV+ATPGRL D L K +L C L LDEADR++D+GFE IR + D + RQTL++S
Sbjct: 232 IVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFS 291
Query: 344 ATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIV 457
AT P +++ A L V +N+G +AN +++Q V
Sbjct: 292 ATMPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQEV 328
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 119 bits (287), Expect = 9e-28
Identities = 57/136 (41%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 184
P LVLAPTRELA+Q+++ EF S+ +T C++GG P +Q R+L G+++ + TPG
Sbjct: 191 PQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPG 247
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEV 364
R+ID +K+G NL ++VLDEAD+ML +GF + I+ ++ RQ++M+SAT P +
Sbjct: 248 RIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWI 307
Query: 365 RKLAEDYLGDYVQINI 412
R L + YL + + I++
Sbjct: 308 RSLTKKYLNNPLTIDL 323
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 117 bits (281), Expect = 5e-27
Identities = 58/135 (42%), Positives = 88/135 (65%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P LVLAPTRELA+Q+++ E ++ Y+ CV+GG Q L RGV++V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 367
+ID ++ + L YLVLDEAD+ML +GFE + I++ + RQ++++SAT P V+
Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVK 298
Query: 368 KLAEDYLGDYVQINI 412
KLA YL + + I++
Sbjct: 299 KLARKYLDNPLNIDL 313
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 101 bits (243), Expect = 2e-22
Identities = 55/131 (41%), Positives = 74/131 (56%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D LK+ + VLDEAD ML GF+ QI I + P Q ++SAT P E ++
Sbjct: 170 DMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 374 AEDYLGDYVQI 406
++ V+I
Sbjct: 230 TRKFMSKPVRI 240
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 101 bits (241), Expect = 3e-22
Identities = 53/137 (38%), Positives = 76/137 (55%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR
Sbjct: 187 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 246
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 367
++D L K T L VLDE D ML GF Q+ +I Q Q L++SAT +EV
Sbjct: 247 VVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVE 305
Query: 368 KLAEDYLGDYVQINIGS 418
K+ + + ++IG+
Sbjct: 306 KVGGSLAKEIILVSIGN 322
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 101 bits (241), Expect = 3e-22
Identities = 53/137 (38%), Positives = 76/137 (55%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR
Sbjct: 50 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 109
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 367
++D L K T L VLDE D ML GF Q+ +I Q Q L++SAT +EV
Sbjct: 110 VVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVE 168
Query: 368 KLAEDYLGDYVQINIGS 418
K+ + + ++IG+
Sbjct: 169 KVGGSLAKEIILVSIGN 185
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 101 bits (241), Expect = 3e-22
Identities = 51/133 (38%), Positives = 75/133 (56%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
A++L PTRELA Q QV E + GG R+ L + V +++ TPGR++
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D KKG L+ C LV+DEAD++L + F+P I ++I + RQ LM+SAT+P V+
Sbjct: 285 DLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSF 344
Query: 374 AEDYLGDYVQINI 412
+ YL IN+
Sbjct: 345 KDRYLKKPYIINL 357
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 100 bits (239), Expect = 6e-22
Identities = 48/133 (36%), Positives = 77/133 (57%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
A+++ PTRELA Q QV E G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D KKG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 374 AEDYLGDYVQINI 412
+ +L + IN+
Sbjct: 322 KDRFLTNPYVINL 334
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 100 bits (239), Expect = 6e-22
Identities = 48/133 (36%), Positives = 77/133 (57%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
A+++ PTRELA Q QV E G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D KKG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 374 AEDYLGDYVQINI 412
+ +L + IN+
Sbjct: 322 KDRFLTNPYVINL 334
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 99.5 bits (237), Expect = 1e-21
Identities = 54/131 (41%), Positives = 74/131 (56%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D L++ + VLDEAD ML GF+ QI I + P Q ++SAT P E ++
Sbjct: 170 DMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 374 AEDYLGDYVQI 406
++ V+I
Sbjct: 230 TRKFMSKPVRI 240
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 99.1 bits (236), Expect = 1e-21
Identities = 49/133 (36%), Positives = 76/133 (57%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
A++L PTRELA Q QV E ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D KKG L+ C LV+DEAD++L F+P + ++I + +RQ LM+SAT+P V+
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 374 AEDYLGDYVQINI 412
+ +L IN+
Sbjct: 315 KDRHLRKPYVINL 327
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 99.1 bits (236), Expect = 1e-21
Identities = 49/133 (36%), Positives = 76/133 (57%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
A++L PTRELA Q QV E ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D KKG L+ C LV+DEAD++L F+P + ++I + +RQ LM+SAT+P V+
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 374 AEDYLGDYVQINI 412
+ +L IN+
Sbjct: 315 KDRHLRKPYVINL 327
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 97.9 bits (233), Expect = 3e-21
Identities = 53/131 (40%), Positives = 73/131 (55%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
ALVLAPTRELAQQI++V G+ V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D L++ + VLDEAD ML GF+ QI I + Q ++SAT P E ++
Sbjct: 172 DLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEI 231
Query: 374 AEDYLGDYVQI 406
++ V+I
Sbjct: 232 TRKFMNKPVRI 242
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 97.1 bits (231), Expect = 5e-21
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P LVL PTRELA+Q+ +G S + + C++GG Q L+RGV+IV+ TPGR
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR--QTLMWSATWPKE 361
+ D +++ + + VLDEAD ML MGF + I+ ++ QTL++SAT P
Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSW 294
Query: 362 VRKLAEDYL-GDYVQIN-IGSLQLSANHNILQIVHVC 466
V+ ++ +L D I+ +G+ ++ A++++ I C
Sbjct: 295 VKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPC 331
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 96.7 bits (230), Expect = 7e-21
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
G AL+L+PTR+LA+Q + E G + +R + + GG +Q +L +G +++IATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 185 RLIDFLKK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
RL+ L + L+ Y+V DEAD + MGF Q+ +I+ Q+ +RQTL++SAT P
Sbjct: 158 RLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSA 217
Query: 362 VRKLAE 379
+ + A+
Sbjct: 218 LAEFAK 223
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 93.9 bits (223), Expect = 5e-20
Identities = 47/131 (35%), Positives = 73/131 (55%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
AL+L+PTRELA Q ++ G + ++ GG E R LE GV +V TPGR+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVC 165
Query: 194 DFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
D +K+ + + L+LDE+D ML GF+ QI + + PD Q + SAT P E+ ++
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225
Query: 374 AEDYLGDYVQI 406
++ + V+I
Sbjct: 226 TSKFMTEPVKI 236
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 92.7 bits (220), Expect = 1e-19
Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
A VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151
Query: 194 DFLK--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR 367
D + KG + L+ YLVLDEADR+L+ FE + +I+++I +R+T ++SAT K+VR
Sbjct: 152 DHMSDTKGFS-LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVR 210
Query: 368 KLAEDYLGDYVQINIGS 418
KL L + V+I S
Sbjct: 211 KLQRACLRNPVKIEAAS 227
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 92.7 bits (220), Expect = 1e-19
Identities = 48/130 (36%), Positives = 73/130 (56%)
Frame = +2
Query: 17 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 196
LVL+P+RELA Q ++ G + ++ GG E + LERGV V TPGR+ D
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYD 153
Query: 197 FLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLA 376
+K+G+ + LVLDE+D ML G + QI + + D Q + SAT P+E+ ++
Sbjct: 154 MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMT 213
Query: 377 EDYLGDYVQI 406
E ++ D V+I
Sbjct: 214 EKFMTDPVRI 223
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 88.2 bits (209), Expect = 2e-18
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+G LV+ PTRELA Q VA E V GG ++ +A L +GV +++ATP
Sbjct: 225 NGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATP 284
Query: 182 GRLIDFLKKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
GRL+D L+ + + +LV+DEADR+L+ FE ++KI++ + RQT ++SAT
Sbjct: 285 GRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSA 344
Query: 359 EVRKLAEDYLGDYVQINI 412
+V LA L V I++
Sbjct: 345 KVEDLARVSLTSPVYIDV 362
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 88.2 bits (209), Expect = 2e-18
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +2
Query: 17 LVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 196
L+L PTRELA QI + + ++ + GG REQ L +IV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 197 FLKKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
L+ + +L L+LDEADR+L GF +I +++ RQT+++SAT +EV++L
Sbjct: 302 HLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKEL 361
Query: 374 AE 379
+
Sbjct: 362 VK 363
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 88.2 bits (209), Expect = 2e-18
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 11/160 (6%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 187
P +VL PTREL++Q+ +VA + + R+ V GG+ R Q L +++V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP------DR--QTLMWS 343
++ +++G YLVLDEAD M D GF P+IRK + + D+ QT++ +
Sbjct: 250 ILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVT 309
Query: 344 ATWPKEVRKLAEDYLGDYVQINIGSLQ---LSANHNILQI 454
AT V+KL ++ + +L +A H+ +++
Sbjct: 310 ATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKL 349
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 87.4 bits (207), Expect = 4e-18
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
+G +V+ PTRELA Q + VA E + V GG +R +A+ + G +VIATP
Sbjct: 160 NGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATP 219
Query: 182 GRLIDFLKKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
GRL+D L+ + + LV+DEADR+L+ FE + KI+ + RQT ++SAT
Sbjct: 220 GRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTS 279
Query: 359 EVRKLAEDYLGDYVQINI 412
+V+ LA L V +++
Sbjct: 280 KVKDLARVSLTSPVHVDV 297
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 87.0 bits (206), Expect = 6e-18
Identities = 54/128 (42%), Positives = 79/128 (61%), Gaps = 6/128 (4%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQ---QVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
AL+L PTRELA QI + +F + V+ T + G K +Q R +I+IATPG
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ-TLIGGTRFKLDQQRLESEPCQILIATPG 466
Query: 185 RLIDFL--KKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 355
RL+D + K G T+ L ++DEAD +LD+GF + KIID + RQ+L++SAT P
Sbjct: 467 RLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIP 526
Query: 356 KEVRKLAE 379
KEVR++++
Sbjct: 527 KEVRRVSQ 534
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 85.4 bits (202), Expect = 2e-17
Identities = 52/126 (41%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Frame = +2
Query: 17 LVLAPTRELAQQIQQVASEF-GNSSYVRNTCVFGGAPKREQARDLE-RGVEIVIATPGRL 190
L+L PTRELA QI N + + GG R + LE +I+IATPGRL
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 191 IDFL--KKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
+D + K G T+ L ++DEAD +LD+GF+ + KIID + RQ+L++SAT PKE
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKE 575
Query: 362 VRKLAE 379
VR++++
Sbjct: 576 VRRVSQ 581
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 85.0 bits (201), Expect = 2e-17
Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 184
+ ++++PTREL+ QI +VA F ++ V + + GG LE G ++I TPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 185 RLIDFLKKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
RL D +K+ + + L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT +
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 211
Query: 362 VRKLAEDYLGDYVQINIGS 418
V LA+ L + +++ G+
Sbjct: 212 VADLAKAGLRNAMEVISGA 230
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 83.4 bits (197), Expect = 7e-17
Identities = 46/137 (33%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 184
+ ++++PTREL+ QI VA F ++ + V + + GG + + +E G ++I TPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 185 RLIDFLKK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
RL D +++ + + L+LDEADR+L+MGF+ Q+ II ++ R+T ++SAT +
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 362 VRKLAEDYLGDYVQINI 412
V +LA+ L + V++ +
Sbjct: 212 VEELAKAGLRNPVRVEV 228
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 83.0 bits (196), Expect = 9e-17
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 184
G ALV+ PTRELA Q+ + G+ +R + + GG Q L IVI TPG
Sbjct: 126 GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPG 185
Query: 185 RLIDFLKKGTTN---LQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 355
R+ L+ R +LVLDEADR+LD+GF+ ++R I + RQTL++SAT
Sbjct: 186 RIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMT 245
Query: 356 KEVRKLAE 379
++ L E
Sbjct: 246 SNLQALLE 253
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 82.2 bits (194), Expect = 2e-16
Identities = 52/126 (41%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFGGAPKR-EQARDLERGVEIVIATPG 184
+ALV+ PTRELA Q A+ + V GG EQ R +I++ATPG
Sbjct: 132 LALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPG 191
Query: 185 RLIDFLKKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 355
RL D ++ T L+ LVLDEAD +LDMGF I +II + +RQT ++SAT P
Sbjct: 192 RLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVP 251
Query: 356 KEVRKL 373
+EVR++
Sbjct: 252 EEVRQI 257
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 80.2 bits (189), Expect = 6e-16
Identities = 52/126 (41%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVASEFGN-SSYVRNTCVFGGAP-KREQARDLERGVEIVIATPG 184
I LV+ PTRELA Q A+ + V GG EQ R +I++ATPG
Sbjct: 460 IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG 519
Query: 185 RLIDFLKKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 355
RL D ++ + T L LVLDEAD +LDMGF I +II + RQT ++SAT P
Sbjct: 520 RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVP 579
Query: 356 KEVRKL 373
+EVR++
Sbjct: 580 EEVRQI 585
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 79.4 bits (187), Expect = 1e-15
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
DG ++++PTRELA Q V ++ G + GG + ++ + I++ P
Sbjct: 142 DGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAP 201
Query: 182 GRLIDFLKKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 355
GRL+ + + T N + + L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT
Sbjct: 202 GRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQT 260
Query: 356 KEVRKLAEDYLGDYVQINIGSLQLSAN-HNILQIVHV 463
K+V+ LA L D I++ + ++A +++Q V +
Sbjct: 261 KKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMI 297
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 76.2 bits (179), Expect = 1e-14
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 18/165 (10%)
Frame = +2
Query: 5 GPIALVLAPTRELAQQIQQVASEFGNS-SYVRNTCVFGGAPKREQARDLERGVEIVIATP 181
G ALV+ PTREL Q+ + + + ++ V GG K ++ L +G+ I+IATP
Sbjct: 104 GTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATP 163
Query: 182 GRLIDFLKKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRKII-------------DQIRP 319
GRL+D LK + + + +++ DEAD +L++G+ +I +II D I P
Sbjct: 164 GRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVP 223
Query: 320 ---DRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQLSANHNI 445
+Q L+ SAT +V LA+ L D V I + + +L N +I
Sbjct: 224 KGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSI 268
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 75.8 bits (178), Expect = 1e-14
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVAS---EFGNSSYVRNTCVFGGAPKREQARDLERG-VEIVIAT 178
I LV+ PTRELA Q A+ ++ S V+ V GG + R L++ +I++AT
Sbjct: 158 IVLVVCPTRELACQAAAEANILLKYHPSIGVQ--VVIGGTKLPTEQRRLQKSPCQILVAT 215
Query: 179 PGRLIDFLKKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 349
PGRL D + + T L LVLDEAD +LDMGF +I +II + RQT ++SAT
Sbjct: 216 PGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSAT 275
Query: 350 WPKEVRKL 373
EVR++
Sbjct: 276 VSDEVRQI 283
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 71.3 bits (167), Expect = 3e-13
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDL----ERGVEIVIAT 178
+ ++++PTREL+ QI +VA VR A RE D+ E G ++I T
Sbjct: 93 MGVIISPTRELSAQIHKVARA------VR----LDFAKCREVEADMNTLEEEGANLLIGT 142
Query: 179 PGRLIDFLKKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWP 355
PGRL D +K+ + + L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT
Sbjct: 143 PGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQT 202
Query: 356 KEVRKLAE 379
+ V LA+
Sbjct: 203 QAVADLAK 210
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 70.9 bits (166), Expect = 4e-13
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 181
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
GR++ ++ +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 359 EVRKLAEDYLGDYVQINIGSLQLSANHNILQ 451
E+R + + ++ D ++I + H ++Q
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 265
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 70.9 bits (166), Expect = 4e-13
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 181
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 34 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
GR++ ++ +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 92 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 151
Query: 359 EVRKLAEDYLGDYVQINIGSLQLSANHNILQ 451
E+R + + ++ D ++I + H ++Q
Sbjct: 152 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 182
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 70.9 bits (166), Expect = 4e-13
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 181
ALVL TRELA QI F S+Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
GR++ ++ +L+ + +LDE D+ML+ + +++I D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 359 EVRKLAEDYLGDYVQINIGSLQLSANHNILQ 451
E+R + + ++ D ++I + H ++Q
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 265
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 70.5 bits (165), Expect = 5e-13
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIATPG 184
P +VL PT ELA Q+ S R+ V GG +R Q +LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 185 RLIDFLKKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIDQIRPDRQTLMWSATWPKE 361
R + +G L +LDE D + D FE ++ +I+ Q L +AT P E
Sbjct: 512 RFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLE 571
Query: 362 V-RKLAE 379
+ KL E
Sbjct: 572 IYNKLVE 578
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 68.5 bits (160), Expect = 2e-12
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 193
AL++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341
Query: 194 DFLKKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 307
+ + G L ++ VLDEADRM++ G +++ I+D
Sbjct: 342 ELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 64.5 bits (150), Expect = 3e-11
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Frame = +2
Query: 14 ALVLAPTRELAQQI-QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGR 187
A+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR
Sbjct: 194 AMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGR 253
Query: 188 LIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI--------------RPDR 325
+ + K G + C +LVLDE D +L F I +I++ + R +R
Sbjct: 254 IAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANR 313
Query: 326 QTLMWSATWPKEVRKLAEDY 385
QT++ SAT P V + A+ +
Sbjct: 314 QTILVSATVPFSVIRAAKSW 333
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 58.0 bits (134), Expect = 3e-09
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEF--GNSSYVRNTCVFGGAPKREQARDLERGVEIVIA 175
DG A++L+P RELA Q + + G++ ++R P + A + +++I+
Sbjct: 209 DGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLIS 264
Query: 176 TPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI-RPDRQTLMWSATW 352
TP RL +K +L + YLVLDE+D++ + QI ++ P ++SAT
Sbjct: 265 TPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATL 324
Query: 353 PKEVRKLAEDYLGDYVQINIG 415
P V +LA + D V++ IG
Sbjct: 325 PDSVEELARSIMHDAVRVIIG 345
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 56.0 bits (129), Expect = 1e-08
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQA--RDLERGVEIVIATP 181
P AL + PTRELA Q +V + G + + + + A R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDM-GFEP---QIRKIIDQIRPDRQTLMWSAT 349
G L ++ L LV DEAD ML GF +I K I ++ P+ Q L++SAT
Sbjct: 223 GTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSAT 282
Query: 350 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVHVC 466
+ + V+ + D Q+ + L+ + ++ Q VC
Sbjct: 283 FNETVKDFVARTVKDPNQLFVKREDLALD-SVKQYKVVC 320
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 54.4 bits (125), Expect = 4e-08
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 DGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLER-GVEIVIAT 178
+ P L L P++ A Q++ V + + GAP Q L+ E ++AT
Sbjct: 195 NSPFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVAT 253
Query: 179 PGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPK 358
P RL++ + ++ + LV+DE + G+ ++ I I QT++++ ++
Sbjct: 254 PERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSA 313
Query: 359 EVRKLAEDYLGDYV-QINIGSLQLSANHNILQIVHVC 466
+ + +LG V ++ + S I Q V VC
Sbjct: 314 SIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVC 350
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 51.6 bits (118), Expect = 3e-07
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Frame = +2
Query: 8 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCV-FGGAPKREQARDLERGV-EIVIATP 181
P A +L P+REL QQ+ S V+ V + R+ G+ EI+++TP
Sbjct: 121 PSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTP 180
Query: 182 GRLIDFLKKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 349
+ G T + + LVLDEAD +L G+E +R + I Q L+ SAT
Sbjct: 181 ACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSAT 240
Query: 350 WPKEVRKL 373
+V KL
Sbjct: 241 TSSDVEKL 248
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 2e-06
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 23/135 (17%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQV------------ASEFGNSSYVRNTCVFGGAPKREQ------- 136
ALV+ PTR+LA Q++ V S G SS PK +
Sbjct: 97 ALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPD 156
Query: 137 --ARDLERGVEIVIATPGRLIDFLK--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 304
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++ + ++
Sbjct: 157 DLSQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVL 215
Query: 305 DQIRPDRQTLMWSAT 349
+ +L S T
Sbjct: 216 QLTQTSDDSLFPSFT 230
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.9 bits (89), Expect = 8e-04
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Frame = +2
Query: 11 IALVLAPTRELAQQIQQVAS----EFGNSSY-VRNTCVFGGAPKREQARDLERGVEIVIA 175
I+L+L P L +Q+ ++ + E GN V C G P +R +I+++
Sbjct: 164 ISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWP--------DRLPDIIVS 215
Query: 176 TPGRLIDFLK-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWS 343
TP L++ ++ K L+ RC Y+V DEAD +L F+ QI ++I+ +R D
Sbjct: 216 TPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE------ 269
Query: 344 ATWPKEVRKLAEDYLGDYVQINIGSLQL 427
K+V +LA+ LG ++I+ Q+
Sbjct: 270 ----KQVSRLAKSNLGRPMEIDASVPQI 293
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.006
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Frame = +2
Query: 14 ALVLAPTRELAQQIQQVASEFGNSSY--VRNTCVF----GGAPKREQARDLERGVEIVIA 175
A+++ PTREL Q+ +VA S V+ V GG +R ++ I++A
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206
Query: 176 TPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR--PDRQTLMWSA 346
T L L+K + LV+DE D + + +RK++ RQT+ SA
Sbjct: 207 TVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASA 266
Query: 347 TWPK 358
+ P+
Sbjct: 267 SIPQ 270
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 260 RMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 394
++L MG+ + ++ +D PD Q++ W+ W K A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 209 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR 325
G L++ LVLDEA +D + I+KII+Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 209 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDR 325
G L++ LVLDEA +D + I+KII+Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQI 292
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 182 GRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFEPQI 292
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At1g63940.4 68414.m07242 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 482
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 98 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLKKGTT 217
+TCV GG ++ E+G+E++ P DF K+ T
Sbjct: 117 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLT 156
>At1g63940.3 68414.m07239 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 416
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 98 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLKKGTT 217
+TCV GG ++ E+G+E++ P DF K+ T
Sbjct: 117 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLT 156
>At1g63940.2 68414.m07240 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 493
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 98 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLKKGTT 217
+TCV GG ++ E+G+E++ P DF K+ T
Sbjct: 124 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLT 163
>At1g63940.1 68414.m07241 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 486
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 98 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLKKGTT 217
+TCV GG ++ E+G+E++ P DF K+ T
Sbjct: 117 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLT 156
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 26.6 bits (56), Expect = 8.5
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +2
Query: 113 GGAPKREQARDLERGVEIVIATPGRLIDFLKKGTTNLQRCTYLVLDEADRMLDMGFE-PQ 289
GG +R ++ I++AT L L+K + LV+DE D + +
Sbjct: 29 GGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGS 88
Query: 290 IRKIIDQIR--PDRQTLMWSATWPK 358
+RK++ RQT+ SA+ P+
Sbjct: 89 VRKLLTSFSSCDKRQTVFASASIPQ 113
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 236 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
Y+++DEA RM D E + + +D+ R R+ L+ ++++L
Sbjct: 1105 YIIIDEAQRMKDR--ESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 1148
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 236 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKL 373
Y+++DEA RM D E + + +D+ R R+ L+ ++++L
Sbjct: 1104 YIIIDEAQRMKDR--ESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 1147
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,301,073
Number of Sequences: 28952
Number of extensions: 205022
Number of successful extensions: 641
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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