Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H18
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 27 2.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 3.3
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 26 3.3
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 5.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.5
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 7.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 10.0
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 10.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 10.0
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 10.0
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 406 TQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQ 537
T ADG++ S+PL ++ D V+ + N PSI SD +
Sbjct: 66 TGSADGAKDSVPLDIIAGDNTVKEDEEASN-EIPSIWEDSDDER 108
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 173 AACFISYFKLMVGISPNSHSAS 108
A C ++F+ + GI PN SAS
Sbjct: 662 ATCMSAFFRSLAGIMPNVESAS 683
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 442 LPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQN 540
+P L++QG + + GN SI+ SSQN
Sbjct: 144 IPFALVEQGYDVWLGNLRGNKYSIKNIKFSSQN 176
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 484 SSQNGNSPSIETSSDSSQNTPSK 552
SS +G+ +ETSS +S+NT K
Sbjct: 724 SSSSGSDEFLETSSRTSENTKEK 746
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 382 NDNVNRQSTQRADGSQSSIPLPVMLIDQ 465
N NVN + R + +IP+P L DQ
Sbjct: 335 NPNVNATNNNRINIEMLNIPVPKQLFDQ 362
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 484 SSQNGNSPSIETSSDSSQNTPS 549
SS + ++PS+ET++D +Q T S
Sbjct: 295 SSISSHNPSLETANDGNQETVS 316
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 424 SQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSS 534
S SSIP + + TSS + S SI +SS SS
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 426 TTIRSLCALSVDIIISNTFILFKA 355
T+++ CALS D ++SN F+ A
Sbjct: 205 TSLKVGCALSTDDVLSNDFLPISA 228
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 451 MLIDQGVQLGTSSQNGNSPSIETSSD 528
M+ID G + T SQN S S E+ S+
Sbjct: 716 MVIDSGSRRVTRSQNATSQSQESGSE 741
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 427 QSSIPLPV-MLIDQGVQLGTSSQNGN 501
+S I LP+ MLI G+Q+ T QN N
Sbjct: 577 KSKILLPISMLISNGIQVLTFVQNSN 602
>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 198 EQTPDTMGSAKPSCGRALHIIILYEACTSPKVFIGGCG 311
++ PD + + ++LH ++L T K+ G CG
Sbjct: 70 DEKPDLVDDSDEVLLKSLHNVLLETEITEGKMVCGNCG 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,298
Number of Sequences: 5004
Number of extensions: 44632
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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