Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H18
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  30   1.5  
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)                       29   2.6  
SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)                     29   2.6  
SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 388 NVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQNTPS 549
           NV+ QS  + +   ++ P P  +   G Q GT++ NG+      +  S Q T S
Sbjct: 614 NVSPQSGGKQESPANTSPSPERVEGDGSQQGTTAVNGSQQETTVNGVSQQETTS 667


>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
          Length = 249

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/84 (23%), Positives = 38/84 (45%)
 Frame = -3

Query: 356 PFLFSNLVNNLKHLLSTTADKHLRAGTCFI*YNNMKSSSTRWFS*PHRIRSLFVGEIPSR 177
           P   + +   ++HL+        + G      N  + ++ ++ +  HR++  F G  PSR
Sbjct: 154 PTKSTRMNRRIRHLVRRCCKLGAKGGEMGFDCNWDRFTALQYTNIVHRMKMKFQGRKPSR 213

Query: 176 RAACFISYFKLMVGISPNSHSASL 105
           R   ++S+  +   I P SH  SL
Sbjct: 214 RIKRYVSHV-VHSCIKPKSHGRSL 236


>SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 202 CSLAKSHHGVLLVLFPISS*WLGYLQIHTP 113
           C +AK  HG+L  L    + WLG++ I+ P
Sbjct: 76  CGIAKPVHGILNALRGNETAWLGFVPINKP 105


>SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 182 SRRAACFISYFKLMVGISPNSHSASLF*INCTYALSRNYITQYPIK 45
           SR  + F+  + L  G      SAS+F +  + AL R Y T YP+K
Sbjct: 122 SRSFSSFMLVYNLFTGQDVLFGSASIFALT-SVALERMYATMYPLK 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,789
Number of Sequences: 59808
Number of extensions: 309087
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)