Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H18
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   6.9  
AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    27   6.9  
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 379 TNDNVNRQSTQRADGSQSSIPLPVMLIDQG--VQLGTSSQNGNSPSIETSSDSSQNTPSK 552
           +N N +RQS   +  S S +  P+  IDQG  + L  S Q GNS ++  SS       S 
Sbjct: 144 SNANTDRQSAGGSLISSSDMNAPLGGIDQGQLMSLIQSLQGGNSDTLPISSVPRGEDASS 203

Query: 553 QA 558
           +A
Sbjct: 204 EA 205


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 376 VTNDNVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETS 522
           +T D++   + +R      S+P    +   G +LGTSS N + P ++ S
Sbjct: 363 LTADHIRSSTPKRDANVTESVPDISSIAGHGGRLGTSSFNSSIPQMDQS 411


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 379  TNDNVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQNTPS 549
            T  +    +     G +S+  L     D      TS+ +  + S  T+ DSS +TPS
Sbjct: 883  TGSSSESSAISTTSGIESTSTLEASTTDASQDSSTSTSDSGTTSDSTTIDSSNSTPS 939


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 379  TNDNVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQNTPS 549
            T  +    +     G +S+  L     D      TS+ +  + S  T+ DSS +TPS
Sbjct: 883  TGSSSESSAISTTSGIESTSTLEASTTDASQDSSTSTSDSGTTSDSTTIDSSNSTPS 939


>AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical
           protein T25D3.4 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 203 LFVGEIP-SRRAACFISYFKLMVGISPNS 120
           +F+  +P S + +CF  Y KL+VG SP +
Sbjct: 296 VFLSYLPESGQFSCFFVYLKLVVGFSPEA 324


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 478 GTSSQNGNSPSIETSSDSSQNTPS 549
           GTSS+N +SP  E+S+DS+ ++ S
Sbjct: 29  GTSSENNDSPIDESSNDSTTSSLS 52


>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 373 SVTNDNVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQNTPSK 552
           SVTNDN +  +   +  S +S       +    Q  + +Q  +     TSS S Q   SK
Sbjct: 90  SVTNDNTSSNNASTSTSSITSTTTTTTTVPSSQQSQSQNQYSHQRLSSTSSTSQQTGISK 149


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 373 SVTNDNVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQNTPSK 552
           SVTNDN +  +   +  S +S       +    Q  + +Q  +     TSS S Q   SK
Sbjct: 90  SVTNDNTSSNNASTSTSSITSTTTTTTTVPSSQQSQSQNQYSHQRLSSTSSTSQQTGISK 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,667
Number of Sequences: 27780
Number of extensions: 241919
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)