Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H18
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 250 RALPHDGLADPIVSGVCSLAKSHHGVLLVLFPISS*WLGYLQ 125
           R  P D        G C++   H G++L   P     LGYL+
Sbjct: 149 RTNPLDDSISQANEGFCAVISMHDGLVLYTTPSICTALGYLK 190


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 250 RALPHDGLADPIVSGVCSLAKSHHGVLLVLFPISS*WLGYLQ 125
           R  P D        G C++   H G++L   P     LGYL+
Sbjct: 144 RTNPLDDSISQANEGFCAVISMHDGLVLYTTPSICTALGYLK 185


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 178 GVLLVLFPISS*WLGYLQ 125
           GVLL+L PI++  LG++Q
Sbjct: 14  GVLLMLAPINALLLGFVQ 31


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 331 ITLNIFCPQPPINTLGLVHASYNII 257
           IT N+F P PP  T  +   +++++
Sbjct: 221 ITNNLFYPYPPYGTFNIKGDTFDLM 245


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 118 CEFGDIPTISLK*EIKQAARRDGISPTNKLLIRW 219
           C FG   T++ K E      R  +SPT  +L+++
Sbjct: 605 CLFGHNVTLANKFESLSEPLRIHVSPTTYILLKY 638


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 475 LGTSSQNGNSPSIETSSDSSQNTPS 549
           LG   QNG +PS   SS S+ +  S
Sbjct: 171 LGHHHQNGATPSSLVSSASASSAVS 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,540
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)