Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H18
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    29   2.1  
At2g16400.1 68415.m01877 homeodomain-containing protein                29   2.8  
At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70...    27   6.4  
At5g40940.1 68418.m04971 hypothetical protein                          27   8.5  

>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 388 NVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSD 528
           N+N+Q  +RA+   SS  LP   +DQ VQL    Q    P++  + D
Sbjct: 317 NMNKQVYRRAERLPSS--LPTSTVDQSVQLVNLPQLEKEPTVVGNKD 361


>At2g16400.1 68415.m01877 homeodomain-containing protein
          Length = 482

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 409 QRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQNT 543
           Q  D +QSS   P +   Q +Q  +SS NG+ P +  SS   QNT
Sbjct: 361 QENDPNQSSENTPEITEIQELQTESSSNNGHVPGV-ASSSMRQNT 404


>At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70,
           putative strong similarity to heat shock protein 70
           [Arabidopsis thaliana] GI:6746592; similar to heat shock
           70 protein - Spinacia oleracea,PID:g2654208
          Length = 718

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = +1

Query: 397 RQSTQRADGSQSSIPLPVMLIDQ---GVQLGTSSQ-----NGNSPSIETSSDSSQNTPS 549
           R  T+   G+      PV ++++   G+ LGT++       G  P+I T+++  + TPS
Sbjct: 56  RMGTRNGGGASRYAVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPS 114


>At5g40940.1 68418.m04971 hypothetical protein
          Length = 424

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 382 NDNVNRQSTQRADGSQSSIPLPVMLIDQGVQLGTSSQNGNSPSIETSSDSSQNTPSK 552
           +D      T+ +D S SS  +P      G     SS     PS   +SDS++N P++
Sbjct: 191 SDEFFTSPTKISDDSSSSSSIPSTTSSTGSIPIPSSATQTPPSPNIASDSTRNLPNR 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,223
Number of Sequences: 28952
Number of extensions: 222595
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)