Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H17
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.1  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    25   4.1  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   5.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    24   9.4  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           24   9.4  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   9.4  

>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 1   LIYTFFFFFGGKCIYALPLPIVLVRPKSPN 90
           L+     F+    +Y LPL + L  PK+PN
Sbjct: 73  LVELLSLFYCAYVMYFLPLEVGLFNPKTPN 102


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 106 PPYPLHWGTSVSLIQWVRVVHKCISPRKKKKT 11
           PPY    G S +      V+HKC+ P ++  T
Sbjct: 39  PPYSFVAGLSKNTSSNSFVIHKCLPPLQRNNT 70


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 149 SAGESHTGAETSLRTPLPIALGDFGLTN 66
           +A +   G+  + + PLP+A+ DFG  N
Sbjct: 11  NAKDGFKGSNKASKFPLPLAMWDFGHCN 38


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 446 ITKLHDNYNSKFKHLEDGTKRILYLXXMHEENTDSK 339
           IT+L + YN K    ++  KR   L  + EEN  +K
Sbjct: 608 ITQLSERYNDKCHEFDELQKR---LQTLEEENNKAK 640


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 37  CIYALPLPIVLVRPKSPNAMGKGVR 111
           C+   P+P+++VRP       K  R
Sbjct: 265 CLQKSPIPVIVVRPDRKRVRSKNKR 289


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 186 WDRGDTGWLSQSPRRILIYT*LIFKYLYLTN 278
           W+R D   +  SPR    +   I K+LY+ N
Sbjct: 199 WNRDDKTDMPSSPREWYTFVQSISKHLYIHN 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,353
Number of Sequences: 5004
Number of extensions: 38600
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)