Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H17
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802...    30   0.75 
02_01_0229 + 1524951-1526174                                           29   1.7  
12_01_0512 - 4055074-4055337,4055424-4055727,4055774-4055898,405...    28   3.0  
03_05_0856 - 28271274-28271408,28271532-28271645,28271950-282720...    28   3.0  
04_03_0803 - 19835284-19836050,19836337-19836418                       28   4.0  
01_07_0139 - 41385823-41386656                                         27   7.0  
08_02_1188 + 25053594-25054941,25055025-25055650                       27   9.2  
06_03_0778 - 24523780-24526353                                         27   9.2  
06_01_0019 + 208204-208533,208642-208844,208969-209107                 27   9.2  
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677...    27   9.2  
01_06_1630 + 38753016-38753209,38753904-38754039,38754291-387544...    27   9.2  

>01_03_0156 +
           13279354-13279479,13279722-13279790,13280102-13280272,
           13280358-13280464,13281332-13281437,13281540-13281586,
           13283429-13283747,13283917-13284006,13284095-13284157,
           13284303-13284377,13285379-13285441,13286677-13286700,
           13286926-13286978,13287687-13287861
          Length = 495

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 228 DAVTAKATPCRPYPKRGGLARAVLLGKRGRVTHWSGDV 115
           D +T K     P+PK   LAR  +LG  G    W+G V
Sbjct: 152 DRLTRKQLANLPFPKEETLARHSILGPNGLHGQWTGPV 189


>02_01_0229 + 1524951-1526174
          Length = 407

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 180 GGLARAVLLGKRGRVTHWSGDVPPHPLTHCIGGLR 76
           GG  RAV L + G    WS   PP    H +G LR
Sbjct: 179 GGGGRAVALCRPGTSPSWSAHHPPGGADHQLGDLR 213


>12_01_0512 -
           4055074-4055337,4055424-4055727,4055774-4055898,
           4055995-4056164,4056264-4056524,4056644-4057153,
           4057309-4057588,4057669-4057971
          Length = 738

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 199 SPLSQTRRTGPGGFIG*ARASHTLERRRPSAPPYPLHWGTS--VSLIQWVRVVHKCISPR 26
           SP++     G  GF+  A +SH LE  +  AP Y +H   S  + +  +  V+ + +S R
Sbjct: 523 SPVTGDDVAGTFGFVAAAASSHLLEEFKYLAPEYFMHGKVSDKIDVYAFGVVLLELVSGR 582

Query: 25  K 23
           K
Sbjct: 583 K 583


>03_05_0856 -
           28271274-28271408,28271532-28271645,28271950-28272020,
           28273791-28273839,28274721-28274812,28274901-28274943,
           28275051-28275163,28275240-28275355,28275474-28275562,
           28276724-28276765,28277397-28277507,28278407-28278511,
           28278773-28278850,28278940-28279021,28279123-28279280
          Length = 465

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 140 ESHTGAETSLRTPLPIALGDFGLTN 66
           E+H       RT +P+++GD+GL N
Sbjct: 14  ENHRAGNELTRTNMPLSVGDYGLQN 38


>04_03_0803 - 19835284-19836050,19836337-19836418
          Length = 282

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 83  PPMQWVRGCGGTSPLQCVTRPRLPNKTARASPPRL-G*GRHG 205
           PP +     GGT+P   V  P  P  T  A+PP++ G G  G
Sbjct: 78  PPPKKPETAGGTTPAPAVANPP-PAATVAATPPKVDGAGNKG 118


>01_07_0139 - 41385823-41386656
          Length = 277

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -3

Query: 201 CRPYPKRGGLARAVLLGKRGR-----VTHWSGDVPPHPLTHCIGGLRS 73
           CRP+ +     R  LL +  R     +  W G +  HP+  CI G R+
Sbjct: 34  CRPWRRALKTTRLGLLKQPNRPYSVNLELWCGSIELHPIRRCINGERT 81


>08_02_1188 + 25053594-25054941,25055025-25055650
          Length = 657

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 136 HTLERRRPSAPPYPLHWGTSVSLIQ----WVRVVHKCISPRK 23
           H+     P+A P PL W   +S++Q     +  +H+C SPR+
Sbjct: 445 HSALHGGPTASPTPLPWSMRLSIVQGAARGLAYLHEC-SPRR 485


>06_03_0778 - 24523780-24526353
          Length = 857

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 169 PGGFIG*ARASHTLERRRPSAPPYPLHWGTSVSLIQWVRVVHK-CISP 29
           PGG +  +   H   RRRP  PP+      ++++ + +  +H+ C SP
Sbjct: 603 PGGSLR-SFLFHQQPRRRPPPPPWTWRAEAALAIAKGIEYLHEGCASP 649


>06_01_0019 + 208204-208533,208642-208844,208969-209107
          Length = 223

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 106 PPYPLHWGTSVSLIQWVRVVHK 41
           PP PL   T+ SLI  +R +HK
Sbjct: 147 PPPPLQHHTTTSLIMMIRNIHK 168


>02_05_0146 -
           26267245-26267339,26267427-26267469,26267589-26267725,
           26268172-26268299,26268419-26268495,26268593-26268679,
           26268817-26268933,26269115-26269165,26269383-26269497,
           26270033-26270292
          Length = 369

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 90  CNG*GGAEGRLRSSV*L-ARAYPIKPPGPVRR 182
           C+G GG  GRLR S    A A  ++PP P RR
Sbjct: 10  CSGLGGPGGRLRPSPRPGAYADRLRPPLPARR 41


>01_06_1630 +
           38753016-38753209,38753904-38754039,38754291-38754404,
           38755053-38755112,38755223-38755252,38755523-38756206
          Length = 405

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 170 PGRFYWVSAGESHTGAETSLRTPLPIALGDF 78
           PG+F  +S  ES   ++  L  P+P+AL  F
Sbjct: 310 PGKFALLSRLESFNVSDNLLSGPIPVALSKF 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,938
Number of Sequences: 37544
Number of extensions: 302416
Number of successful extensions: 835
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)