Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H17
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30129| Best HMM Match : Y_phosphatase (HMM E-Value=6.7e-13)         30   0.77 
SB_33278| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)                27   5.4  
SB_40441| Best HMM Match : DUF1531 (HMM E-Value=4.3)                   27   7.2  
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_30129| Best HMM Match : Y_phosphatase (HMM E-Value=6.7e-13)
          Length = 139

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 189 PKRGGLARAVLLGKRGRVTHWSGDVPPHP-LTHCIGGL 79
           P   GL+R  L+   G+V +W  +   HP + HC  G+
Sbjct: 60  PLEDGLSRCQLIDLIGQVQYWQAESGRHPIIVHCSAGV 97


>SB_33278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 209 PPRVAPIPNAADWPGRFYWVSAGESHTGAETSLRTP 102
           PPRV+ IPN A   G  Y    G    G +++  +P
Sbjct: 428 PPRVSSIPNTAGGRGLGYGAGGGSGGRGIDSNTSSP 463


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 206 PRVAPIPNAADWPGRFYWVSAGESHTGAETSLRTPLP 96
           PR APIP+ ++W  +    S G+S +G  +  RT  P
Sbjct: 482 PRAAPIPSFSEW--KKSNESTGDSSSGGASPARTTSP 516


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 138  LARAYPIKPPGPVRRVWDRGDTG 206
            + R+ P+ PPGP     DRG TG
Sbjct: 1027 MGRSGPVGPPGPPGSPGDRGQTG 1049


>SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -3

Query: 183 RGGLARAVLLGKRGR-VTHWSGDVP 112
           +GGL   +L+G+RG+ V+ +SGD+P
Sbjct: 206 QGGLELRILVGQRGKIVSGFSGDLP 230


>SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 142 ASHTLERRRPSAPPYPLHWGTSVSLIQWVR--VVHKCISPR 26
           A  TL  RRP A   P+H   +V +  W+   VV +C+  R
Sbjct: 294 AEDTLRARRPPAWRQPVHAKRTVVIRMWISKGVVEQCLISR 334


>SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)
          Length = 611

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 132 HWSGDVPPHPLTHCIGGLRSH 70
           HW  + PPH  T  IG L SH
Sbjct: 289 HWMNEQPPHSPTAKIGILESH 309


>SB_40441| Best HMM Match : DUF1531 (HMM E-Value=4.3)
          Length = 406

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 150 KRGRVTHWSGDVPPHPLTHCIG 85
           K G  T    +VP  PLTHC G
Sbjct: 40  KNGAATKIQAEVPQAPLTHCHG 61


>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 100 KGVRRDVSAPVCDSPALTQ*NRPGQSA-AFGIGATRGGFRSHRVA 231
           KG+RRD+   VC +       RP  +A AF I      FR+  V+
Sbjct: 305 KGIRRDIKRMVCSTLCCIDYVRPISAAEAFLISPAARAFRNRSVS 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,433
Number of Sequences: 59808
Number of extensions: 311811
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)