Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H17
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39740-4|AAO91692.1|  417|Caenorhabditis elegans C.elegans homeo...    27   4.8  
AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote defect...    27   4.8  
AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote defec...    27   4.8  
Z73104-7|CAI59116.1|  513|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC024753-6|AAF60458.2|  407|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U39740-4|AAO91692.1|  417|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform c protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 164 RFYWVSAGESHTGAETS-LRTPLPIALGDFGLTNTMGKGSA*MHFPPKKKKN 12
           +FYWV +G S++G  +S L  P P  L    L NT  + +A     PKK +N
Sbjct: 225 KFYWVISGASNSGLLSSPLIAPSPTLLQ--SLMNTPTQPTA--SLTPKKAEN 272


>AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote
           defective-1 protein.
          Length = 706

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 116 SLRTPLPIALGDFGLTNTMGKG 51
           S +  + + LGDFGL  T+G+G
Sbjct: 142 SKKKKMTVKLGDFGLATTLGRG 163


>AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote
           defective: embryonic lethalprotein 1 protein.
          Length = 706

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 116 SLRTPLPIALGDFGLTNTMGKG 51
           S +  + + LGDFGL  T+G+G
Sbjct: 142 SKKKKMTVKLGDFGLATTLGRG 163


>Z73104-7|CAI59116.1|  513|Caenorhabditis elegans Hypothetical
           protein K08D8.4d protein.
          Length = 513

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 100 KGVRRDVSAPVCDSPALTQ*NRPGQSAAFGIGATRG 207
           +G + D+     DSP       PG S   G GATRG
Sbjct: 448 QGFQVDILTTKNDSPTTFPTLAPGASTTIGTGATRG 483


>AC024753-6|AAF60458.2|  407|Caenorhabditis elegans Hypothetical
           protein Y23H5B.4 protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 69  SETEVPQCNG*GGA 110
           SET +PQCNG G A
Sbjct: 140 SETRIPQCNGFGAA 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,097
Number of Sequences: 27780
Number of extensions: 227919
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)