Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H17
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05190.1 68418.m00553 expressed protein similar to unknown pr...    28   2.5  
At4g09890.1 68417.m01620 expressed protein                             28   3.4  

>At5g05190.1 68418.m00553 expressed protein similar to unknown
           protein (emb|CAB88044.1)
          Length = 615

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 172 GPGGFIG*ARASHTLERRRPSAPPYP 95
           GPGG +G     H  E+ RP  P YP
Sbjct: 327 GPGGRLGRQGRRHVTEQLRPDMPFYP 352


>At4g09890.1 68417.m01620 expressed protein
          Length = 87

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 78 RSH*YNG*G*CINAFPPEKKKKRI 7
          RS+ YN  G CIN  P  K+KKR+
Sbjct: 26 RSNSYNFNGPCINTDPEMKRKKRV 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,981
Number of Sequences: 28952
Number of extensions: 218524
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)