Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H16
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 29 0.41
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 28 0.71
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 28 0.94
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 27 1.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 3.8
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 6.7
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 25 6.7
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.7
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 6.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 8.8
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.41
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 129 SMGFSAYCDGVPDGKAFGCTPYRSTVPPTR 40
S F A D DGK FG + +S +PPTR
Sbjct: 317 SFVFQAQNDMQDDGKGFGISNLKSFLPPTR 346
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 0.71
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 132 GEDVFDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEK 308
G++ ++ + E S+ EL++ D +RK T SSQ + E K+ P+ +F K
Sbjct: 50 GKNGYENRKITEEGDSKSSELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDPI-AFQHK 107
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 27.9 bits (59), Expect = 0.94
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 2 KHDRSICSLSCCGRVGGTVLRYGVQP 79
KH + + GR+GGT + YG P
Sbjct: 28 KHGAKVALIEASGRLGGTCVNYGCVP 53
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 424 TFTQSGNVLTSK*FFCTSPSYL*TACTIRRPVRA-WTTMSFSSKEVKGI 281
+F+ N + F+ P + CTI+ + + W+ +SF+SKE G+
Sbjct: 163 SFSSEDNADATNSFYLDEPEF----CTIKGNIYSNWSFLSFNSKEAAGV 207
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 69 GYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSEL 173
GY+ + F E+H N LR + + F FW+ L
Sbjct: 975 GYSVLSFFRENHKNSLRKSW---EAFKRRAFWTSL 1006
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 279 TIPLTSFDEKDIVVQARTG 335
TIPL + + KD+V QARTG
Sbjct: 44 TIPL-ALEGKDLVAQARTG 61
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 171 LSSELRELDNMLADFYRKF 227
L S+L EL ++L FY+KF
Sbjct: 421 LESQLVELQSLLTQFYQKF 439
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 242 IVSRHRRQRIQGDYTFNLL**EGHRCPSPDRSSDGASC 355
++S++ +R++ DY NL+ GH S + SS C
Sbjct: 81 VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLC 118
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 392 QIILLYIALVLMNSLHHQKTGPGLDND 312
+++LLYI VL+ ++ PGLD D
Sbjct: 265 RVLLLYIISVLVVGINLPYNTPGLDGD 291
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +1
Query: 118 EAHTSARTSSIPVGSGPNSPASYASWXXXXXXXXXXXXXXXXXLKASKAT 267
E +SA TSS+ P S +S +SW +S AT
Sbjct: 931 ETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 168 ELSSELRELDNMLADFYRKFPT 233
EL +EL DN+LA R+F T
Sbjct: 590 ELKAELNLRDNLLASMQREFET 611
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 30 LAAAVSAAPYYGMGYNQMPFHPEHHH 107
++ A ++AP+ GY HPE+H+
Sbjct: 194 MSFANTSAPFSTKGYKMKYKHPEYHY 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,460
Number of Sequences: 5004
Number of extensions: 43056
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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