Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H16
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     31   0.56 
SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9)            29   1.7  
SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   3.9  
SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   6.9  
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)                  27   9.1  
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)                    27   9.1  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       27   9.1  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             27   9.1  

>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 438 SNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSEDRS 328
           S  +S LR P  S  P+ SS H P T +Q +PS+++S
Sbjct: 282 SRHQSSLRHPGSS-KPSTSSKHYPATIDQNSPSKNKS 317


>SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9)
          Length = 93

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 60  YGMGYNQMPFHPEHHHNRLRSP 125
           Y   Y+  PFHP HH  R R P
Sbjct: 30  YFYRYHHRPFHPHHHRIRRRPP 51


>SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +3

Query: 228 PTPASSSQGIEGNEYKVTIPLTSFDEKDIVVQARTGLLMVQAVHKYEGDVQKNYLDVRTL 407
           P   S +  I+ ++  V + LTS  E  +  Q    L++       +     + +     
Sbjct: 423 PVTNSEASKIKASKQDVLVELTSSKELAVCKQVMDSLILKMIEAGLKSCPSASEVQATKQ 482

Query: 408 PDCVNVNGSWTYSQGVLKIVFPVKPDVATD-VKIM 509
           P  V         +G LK+V+P   D+++D VK++
Sbjct: 483 PQLVLEQVRVVNDEGQLKVVYPSHVDLSSDSVKVI 517


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 308 GHRCPSPDRSSDGASCS*VRGRC 376
           GH C  P   ++GA C+ V G+C
Sbjct: 363 GHNCAHPCNCTNGARCNAVTGQC 385


>SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 36  AAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSS 179
           A +S AP Y   +   PF P  H+      + G ++F  GR +  L S
Sbjct: 76  AGISLAPLYYTAFTNAPFPPRDHYQYYIFVFLGGELF--GRSYLVLMS 121


>SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 299

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 369 GDVQKNYLDVRTLP---DCVNVNGSWT 440
           GD+ +  L V T P   DCVN NGS+T
Sbjct: 257 GDIDECALGVATCPASADCVNNNGSYT 283


>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
          Length = 1185

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 12  ALFVLCLAAAVSAAPYYGMGYNQMPF 89
           +LF+LC+ A+   APY+   Y    +
Sbjct: 806 SLFLLCIQASAVRAPYFSCAYRHQQY 831


>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
          Length = 1442

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 153 GRFWSELSSELRELDNMLADFYRKF-PTPASSSQGIEGNEYKVTIPLTSFDEKDIV 317
           G F S+  +ELR+L+  L D Y+       +S + +  + Y   I L S D+++ +
Sbjct: 458 GGFISQRHNELRDLEADLLDMYKPLKDLDLNSDRWLYDHRYWSNISLQSADKREAI 513


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 144 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 260
           FD     SE  S +REL +   D +RK  TPA+++  I+
Sbjct: 11  FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 49


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 144 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 260
           FD     SE  S +REL +   D +RK  TPA+++  I+
Sbjct: 683 FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 721


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,160
Number of Sequences: 59808
Number of extensions: 370782
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)