Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H15
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 142 1e-34
SB_43675| Best HMM Match : K_tetra (HMM E-Value=0) 29 3.5
SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29962| Best HMM Match : CBFB_NFYA (HMM E-Value=3.4) 28 4.6
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 28 4.6
SB_11651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_6447| Best HMM Match : DUF164 (HMM E-Value=0.48) 28 4.6
SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06) 27 8.1
SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) 27 8.1
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 142 bits (345), Expect = 1e-34
Identities = 71/113 (62%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
Frame = +2
Query: 239 PEGL--HLIICVHGLDGNSGDLRLVKTYLELGLPGARLDFLMSERNQGDTFSDFDTMTDR 412
PE L HLI+CVHGLDGNSGDLRL + YLE+ LP RLDFLMSE NQ DTF F+ MT++
Sbjct: 696 PETLETHLIVCVHGLDGNSGDLRLFRCYLEMALPSTRLDFLMSEVNQADTFVTFEEMTEK 755
Query: 413 LVQEIVTHIQ-NSSEPARISFVGHSLGTIIIRSALARAQMKAYLGKLHTFLSL 568
LVQEI +I+ S P+++SF+GHSLG IIIRSAL M+ + GK HT LSL
Sbjct: 756 LVQEIRHYIEAYSIFPSKLSFIGHSLGNIIIRSALTHPDMRLFAGKFHTLLSL 808
>SB_43675| Best HMM Match : K_tetra (HMM E-Value=0)
Length = 794
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 430 HAHSKFKRTGPNKLRGALFGDNNNQIRSSKGPNEGLFGETA 552
+AH++ K P K RG LFG N + S P++ + + A
Sbjct: 523 YAHAQAKMKLPKKARGKLFGAANVLMSQSARPSDDMSTDNA 563
>SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +2
Query: 152 YP--GAIYSDFPPVDNSLPYFH 211
YP GA S +PP DNS P+ H
Sbjct: 312 YPPQGATASPYPPADNSAPFLH 333
>SB_29962| Best HMM Match : CBFB_NFYA (HMM E-Value=3.4)
Length = 172
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 353 LMSERNQGDTFSDFDTMTDRLVQEIVTHIQNSSEPARISFVGHSLGTIIIRSALARA 523
L + +N + + + R +++ VT Q S + + +F HS+G + A+ARA
Sbjct: 61 LQNPKNPTNPLVGYRILKIRQIRKWVTESQKSDKSVKRAFTFHSVGESGLAKAIARA 117
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 335 GARLDFLMSERNQGDTFSDFDTMTDRLVQEIVTHIQNSSEPA 460
G D +S ++ DT + FDT+T ++V I+T Q EP+
Sbjct: 954 GVTRDTAISMKDSVDTRATFDTVTQQIVNPIIT--QGMVEPS 993
>SB_11651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 158 GAIYSDFPPVDNSLPYFHISDEYRMFNPE 244
G+I +DFP S P+F S E+ +F E
Sbjct: 2 GSISTDFPSKQPSTPFFEGSSEHSLFRHE 30
>SB_6447| Best HMM Match : DUF164 (HMM E-Value=0.48)
Length = 598
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 472 RGALFGDNNNQIRSSKGPNEGLFGETAHVP 561
RG L G N R++ G EG++ E H+P
Sbjct: 4 RGDLIGPYENYFRTNIGLQEGIYIEDDHIP 33
>SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06)
Length = 226
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 377 DTFSDF--DTMTDRLVQEIVTHIQNSSEPARISFVGHSLGTIIIRSALARAQMKAYLGKL 550
D F DF D M + ++ + ++ A + + GHS GT+I +A A A + K+
Sbjct: 76 DAFWDFSFDEMAKYDLPAMIDFVTKTTGQASLYYAGHSQGTMI--GFIAFAHNPAVIQKV 133
Query: 551 HTFLSL 568
F +L
Sbjct: 134 KAFYAL 139
>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 377 DTFSDF--DTMTDRLVQEIVTHIQNSSEPARISFVGHSLGTIIIRSALARAQMKAYLGKL 550
D F DF D M + ++ + ++ A + + GHS GT+I +A A A + K+
Sbjct: 399 DAFWDFSFDEMAKYDLPAMIDFVTKTTGQASLYYAGHSQGTMI--GFIAFAHNPAVIQKV 456
Query: 551 HTFLSL 568
F +L
Sbjct: 457 KAFYAL 462
>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
Length = 865
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 370 SRRHFLRFRHYDR*TCTRNCHAHSKFKRTGPNKLRGALFGDNNNQIRSSKGP 525
SRRH + R Y + +R+ R+G +LR +FG S K P
Sbjct: 323 SRRHLRKTRTYSK---SRDSAPRPPSMRSGSYRLRRKIFGKRRGVFSSEKSP 371
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,132
Number of Sequences: 59808
Number of extensions: 373044
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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