Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H13
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             196   8e-51
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     188   4e-48
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   3e-11
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             40   0.002
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 31   0.65 
SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_14160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)                  28   4.6  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)                    28   4.6  
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)                 28   6.1  
SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  196 bits (479), Expect = 8e-51
 Identities = 102/162 (62%), Positives = 118/162 (72%), Gaps = 4/162 (2%)
 Frame = +1

Query: 1   EKELREICYDVLCLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQ 180
           E EL E+C  VL LL+  LIP A + ESKVFYLKMKGDYYRY  EVA  + R  VV+ + 
Sbjct: 66  ENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREVVQKAM 125

Query: 181 KAYQDAFEISKA--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELD 354
           KAY +A EI++   K+ PT PIRLGLALNFSVFYYEI+    +AC LAK+AFDDAIAELD
Sbjct: 126 KAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDAIAELD 185

Query: 355 TLNEDSYKDSTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 474
           TL+ED YKDSTLIMQLLRDNLT+     Q   +  E AE GD
Sbjct: 186 TLSEDQYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227



 Score =  138 bits (335), Expect = 2e-33
 Identities = 69/103 (66%), Positives = 86/103 (83%), Gaps = 4/103 (3%)
 Frame = +1

Query: 160 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 330
           +VVE + +AY++A E ++    K+ PT PIRLGLALNFSVF+YEI  + ++AC+LAKQAF
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAF 266

Query: 331 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD-GDE 456
           DDAIAELD+LNED YKDSTLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 267 DDAIAELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  188 bits (457), Expect = 4e-48
 Identities = 91/153 (59%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = +1

Query: 7   ELREICYDVLCLLDKHLIPKAS---NPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDS 177
           EL   C +VL +L+ +L+       N E+KVFYLKM+GDY+RYL EVA G++R   +E S
Sbjct: 95  ELNGKCAEVLDILENYLLKDGQDDINTEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKS 154

Query: 178 QKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDT 357
           ++AY+DA      ++ P+HPIRLGLALNFSVFYYEI N P +AC+LAK+AFDDAIA LD 
Sbjct: 155 REAYKDA-SAKAEELSPSHPIRLGLALNFSVFYYEIENKPPEACKLAKEAFDDAIAVLDN 213

Query: 358 LNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 456
           L ++SYKDSTLIMQLLRDNLTLWTS+   +G +
Sbjct: 214 LKDESYKDSTLIMQLLRDNLTLWTSEQDQEGQD 246


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 29/50 (58%), Positives = 41/50 (82%)
 Frame = +1

Query: 1   EKELREICYDVLCLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 150
           EKEL+++C +VL +L++ LIP A + E+KVFY K+KGDYYRYLAE + G+
Sbjct: 167 EKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLKGDYYRYLAEFSHGQ 215


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +1

Query: 1   EKELREICYDVLCLLDKHLIPKASNPESKVFYLKM 105
           E+EL+ IC ++L LLD  LI  + + ESKVFY K+
Sbjct: 91  EEELKTICGEILSLLDDSLIKNSQSEESKVFYNKI 125


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 331 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 468
           DD   + D  ++DS  + +   QL   L+  + LW S TQGD D  A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 343 RSHHRTPVWRADTPCLVNLISHNRRRRNLTPN 248
           RSHH+  V     PC  +L+S   RR+N+TP+
Sbjct: 194 RSHHQWSVPPGTDPC-TDLLSRGGRRQNMTPH 224


>SB_14160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 343 RSHHRTPVWRADTPCLVNLISHNRRRRNLTPN 248
           RSHH+  V     PC  +L+S   RR+N+TP+
Sbjct: 33  RSHHQWSVPPGTDPC-TDLLSRGGRRQNMTPH 63


>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 306 VSARQTGVR*CDRGTRHT 359
           V  RQ+GVR C RG RHT
Sbjct: 148 VMVRQSGVRYCSRGIRHT 165


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 139  ATGETRHS-VVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 294
            A GETR    + D+ +A +D     KA+ Q     +   ALN S+F++E++NS
Sbjct: 4020 ALGETRRKRSLVDTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067


>SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)
          Length = 198

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 412 NLTLWTSDTQGDGDEPAEGGDN*C 483
           NL+L+T+D  G+   P E GDN C
Sbjct: 39  NLSLFTNDASGNLQPPREIGDNLC 62


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 412 NLTLWTSDTQGDGDEPAEGGDN*C 483
           NL+L+T+D  G+   P E GDN C
Sbjct: 357 NLSLFTNDASGNLQPPREIGDNLC 380


>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 412 NLTLWTSDTQGDGDEPAEGGDN*C 483
           NL+L+T D+ G    PAE G+N C
Sbjct: 701 NLSLFTKDSSGQLQPPAEIGENLC 724


>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
          Length = 711

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -2

Query: 355 CRVPRSHHRTPVWRADTPCLVNL--ISHNRRRRN--LTPNPALL 236
           CR+P S HR    R ++ C  N+  +S   R R   LTP P LL
Sbjct: 651 CRLPSSRHRRRNVRGNSRCRGNVRALSSPMRARTLPLTPRPPLL 694


>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
          Length = 983

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 274 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD 447
           YY I  +  K      Q FDD    +   +ED+ +D+T  ++L+       T+D  GD
Sbjct: 505 YYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATTAIELMNAP----TTDVHGD 558


>SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 25  YDVLCLLDKHLIPKASNPESKVFYLKMKGDYY 120
           YD   ++  HL+P A     +++ +K+  DYY
Sbjct: 6   YDSNTVVSHHLLPSAQTRYIRIYPVKVNSDYY 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,432
Number of Sequences: 59808
Number of extensions: 290079
Number of successful extensions: 914
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)