Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H12
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0216 + 15804110-15804284,15804341-15804351                       30   0.93 
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   0.93 
03_05_0517 - 25118232-25118730,25119002-25119273                       28   2.9  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.9  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.0  
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    27   8.7  
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319...    27   8.7  
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692...    27   8.7  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           27   8.7  

>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 97  SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 219
           SG P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 12  SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 124 HYCRPMEHHYCPPRELCLRQPW 59
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 148 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 258
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 283 SHHGREGCRIAWVDNWDD*NRR 218
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 241 YPPKRYDNPLARGGK 285
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 85  VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 177
           +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 57  ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>07_03_0202 +
           15131001-15131047,15131488-15131754,15131913-15131940,
           15132120-15132179,15132570-15132696,15132907-15133724
          Length = 448

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 73  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGP----SGNYEPISTGPAFVDFN 231
           NR+HV+D          + V I+ PDP   +P + P    S    P +   +F +FN
Sbjct: 19  NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPKVPVSDGNAPNAISKSFFNFN 75


>03_02_0260 -
           6924532-6924757,6925443-6925546,6925729-6926007,
           6926093-6926368,6926460-6926678,6926758-6926926,
           6927208-6927382,6927489-6927600,6929566-6929820
          Length = 604

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 85  VVDNSGVPSDGNSDHVVIANPDPFFSQP 168
           V++N  +P   N  HVV+ANP P    P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 97  SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 207
           SG PS  GN+   + ++P PF  S PS+G SGNY  + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,172,463
Number of Sequences: 37544
Number of extensions: 225095
Number of successful extensions: 559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)