Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H12
(438 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 31 0.45
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 2.4
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 27 4.2
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 27 4.2
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta... 27 5.5
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 27 7.3
At5g45520.1 68418.m05591 hypothetical protein 26 9.7
At4g24150.1 68417.m03465 expressed protein ; expression supporte... 26 9.7
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 26 9.7
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 30.7 bits (66), Expect = 0.45
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 133 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGG 282
++A P P+ P+ GP P+S+ PA N+P Y P GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 145 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPLAR 276
P P S P N P ++ P + P+ +N P PP YD P R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 166 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 267
PS+ PS ++ P TGP+ + HP ++ P D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 5 SDTIRQ*KLSCFSSSPYWPWLP 70
S I + + SC SSP+ PW+P
Sbjct: 96 SKIIEEKRYSCIISSPFTPWVP 117
>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
similar to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana]
Length = 366
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 111 RWNTTIVHHVNSVCGSHGQYGEEEKH 34
+W I HH G HG E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 327 FLLVLKSLIFMRHLLPTTGERVVVSLGWIIGMIEIDERRSSAYGFIIS 184
F +LK+L FM HL E+V V WI + + +Y F IS
Sbjct: 462 FAPILKNLPFMEHLWRHFAEQVKVHHKWIDHLQPSSQSCFLSYRFYIS 509
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 319 SFKIAYLYETFTSHHGREGCRIAW 248
SFK+ L E+ T G E +IAW
Sbjct: 524 SFKVESLMESLTGLQGLESLKIAW 547
>At4g24150.1 68417.m03465 expressed protein ; expression supported
by MPSS
Length = 493
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 73 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 219
N+ + +SG+ + S + DPFFS S+G G AF
Sbjct: 102 NQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAF 150
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +1
Query: 97 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 237
SG SD + F ++G SG Y P GP V P
Sbjct: 4 SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,031,248
Number of Sequences: 28952
Number of extensions: 180233
Number of successful extensions: 483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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