Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H11
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    30   0.36 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   1.9  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   3.3  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   3.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    27   3.3  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   4.4  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   7.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.7  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.7  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 23/89 (25%), Positives = 38/89 (42%)
 Frame = -2

Query: 462  RSQEDLXNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 283
            R QED   G   N+     G  E +  E ++          L  F G+ + +S +   I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168

Query: 282  KECD*FLNDNIIDFNADEMKFLLRIRLQV 196
             EC   L  N+ D   +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 514 FYELDWFTHKITPGQNKIVRNSXE--FSLFXEDSLPXTDLMKLLD 642
           F  LDWFT+  +  QN+++R S +  F    +  L     +KLL+
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLE 698


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 136 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 285
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 210 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 73
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 448 IFLGPKYNDYGFPITLEENWHKFYELDWFTHKIT 549
           I L P  ND  +  T    WHKF++  WF   +T
Sbjct: 418 IELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 262 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VXSDIATDA 438
           E++V    + QF+A +    T+K + +  P   K R+ RL    F   +D +  D ATD 
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATDQ 649

Query: 439 VXKI 450
             K+
Sbjct: 650 GDKM 653


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 24/106 (22%), Positives = 47/106 (44%)
 Frame = +1

Query: 307 NSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDYGFP 486
           ++ F+ +     + P N KV + + +     ++       ++ A  +  +  KYN+    
Sbjct: 97  DATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALM--KYNN---- 150

Query: 487 ITLEENWHKFYELDWFTHKITPGQNKIVRNSXEFSLFXEDSLPXTD 624
            T+    H  ++L+W T       N + R+  EFS+F  D LP T+
Sbjct: 151 -TMIPGAHCTFKLNWATGGGIQHNNFVSRDP-EFSIFVGDLLPTTE 194


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 34  YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 138
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 417 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 274
           LN+   TE ++     ++  +V V S N FFG    + G+   K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 461 LSTTIMDSPSHWKKTGINSTNWIG 532
           LS   +   S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,653
Number of Sequences: 5004
Number of extensions: 53570
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)