Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H11
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    30   1.3  
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    29   3.1  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   5.4  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   5.4  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    28   5.4  

>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +1

Query: 388 KPFSVTIDVXSDIATDAVXKIFLG-PKYNDYGFPITLEENWHKFYELDWFTHKITPGQNK 564
           K F V I   S+I +  + ++F        Y  PI  +   H FY L++F  K+T   + 
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELFPSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-DDI 200

Query: 565 IVRNSXEFSLFXEDSLPXTDL 627
           +V N  +FS+   ++LP  +L
Sbjct: 201 LVSNCSKFSI-EYNNLPDKEL 220


>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 59 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 375 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 226
           W+TNL   +    NL+F  +Y + G  L ++ +    + +++  F   EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +1

Query: 169 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 336
           V  +N F  Y+      YP+  L ++ ++  DVV++K     D+      N++    +E 
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430

Query: 337 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDYGF 483
                +++ + + +L  +      +V S+ ++D   K++  P +N  G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 74  NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 199
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 74  NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 199
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +1

Query: 169 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 336
           V  +N F  Y+      YP+  L ++ ++  DVV++K     D+      N++    +E 
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430

Query: 337 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDYGF 483
                +++ + + +L  +      +V S+ ++D   K++  P +N  G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,449
Number of Sequences: 27780
Number of extensions: 296195
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)