Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H11
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS...    30   1.2  
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS...    30   1.2  
At3g17480.1 68416.m02233 F-box family protein contains F-box dom...    29   2.2  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   6.6  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    27   8.7  
At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR) domai...    27   8.7  

>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 438

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 406 IDVXSDIATDAVXKIF-LGPKYNDYGFPITLEENWHKFY 519
           +++   + T A  +I  + P+YND+ FP    + WHK +
Sbjct: 320 VEIIKILGTPAREEIKNMNPRYNDFKFPQIKAQPWHKIF 358


>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 431

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 406 IDVXSDIATDAVXKIF-LGPKYNDYGFPITLEENWHKFY 519
           +++   + T A  +I  + P+YND+ FP    + WHK +
Sbjct: 313 VEIIKILGTPAREEIKNMNPRYNDFKFPQIKAQPWHKIF 351


>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 373

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 490 TLEENWHKFYELDWFTHKITPGQNKIVRNSXEFSLFXED 606
           T+  +W KF  +D +TH+   G    +    + ++F ED
Sbjct: 291 TIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +1

Query: 103 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 282
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 283 DYSQFDATNSVFLTK 327
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 381 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 241
           ESW  NL ++    ++ +F Q Y V G  ++ + V E     N+ + IDF
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88


>At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -2

Query: 564 LVLPRSYLVR-EPI--QFVEFMPVFFQCDGESIIVVLRSQEDLXNGISGNIGLNVD-GNT 397
           +V+P  Y VR E +  Q  EF  +F+ CD E+ +  +   +     +   IGL +D   +
Sbjct: 95  IVIPIFYKVRTEDVEKQTGEFGHMFWSCDEEASLEEMEKWQVALKAVCNKIGLTLDLKRS 154

Query: 396 ERLVVESWLTNLEVVWVT 343
           E   ++  L  +E V  T
Sbjct: 155 EAKFIKKVLKAVEEVLTT 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,019
Number of Sequences: 28952
Number of extensions: 271580
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)