Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H07
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020     28   4.3  
10_08_0041 - 14374684-14377339,14377371-14378233                       27   7.5  
04_04_0820 - 28342925-28343092,28343194-28343232,28343664-283437...    27   7.5  
09_02_0240 - 6157855-6157891,6158040-6158329                           27   10.0 

>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
          Length = 722

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 489 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 397
           W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 333 WQENCMEQFKLVLEALHQPHRNLYIAVDMEFTA 365


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 489 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 397
           W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 652 WRENCMEQFKLVLEALHQPHRHLYIAVDMEFAA 684


>04_04_0820 -
           28342925-28343092,28343194-28343232,28343664-28343729,
           28343847-28343918,28344008-28344127,28344207-28344752
          Length = 336

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 543 DEDGHGACLAKVTWTPQFWAQNSLP 469
           D  G G CL  V+WT Q +  + LP
Sbjct: 299 DLRGRGLCLVPVSWTSQEYCDSILP 323


>09_02_0240 - 6157855-6157891,6158040-6158329
          Length = 108

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 386 IEKCAENCISTPEYNPVCGSD-NKTYKNQGRLFCAQNCGVQ 505
           I  C+ NC  TP+Y   C  + N+  +N     C   C +Q
Sbjct: 55  INTCSSNCSITPQYCDQCRRESNQQCQNYCYNGCLYGCSLQ 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,730
Number of Sequences: 37544
Number of extensions: 341298
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)