Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H06
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)               86   2e-17
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       32   0.25 
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)                   31   0.77 
SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)            31   0.77 
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)                      28   5.4  
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   7.2  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   7.2  
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             27   9.5  
SB_38953| Best HMM Match : 7tm_1 (HMM E-Value=1.4)                     27   9.5  
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)                   27   9.5  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +2

Query: 305 ECVPENLELKKKVFQNLDNVVDDN-TIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPY 481
           EC PENLELKKKVFQNL+  +  +  I              E+++ + + IV+HP+NPPY
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60

Query: 482 YVPLVEIVPAPWT 520
           YVPLVE++PAPWT
Sbjct: 61  YVPLVEVIPAPWT 73


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
 Frame = +2

Query: 53  VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 232
           V ++G+GL+G   A   A  G +V L+D    Q  +   ++ +Q    +K+ L R  + A
Sbjct: 8   VAVIGAGLMGTCIAGELAYHGARVNLYDR-SAQAMEKSKEMLIQ----QKEQLKREEVMA 62

Query: 233 DEQFQCVKGTCD-LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXX 409
              F      C+ L  AV ++  + E   ENLE+KK VF+++      N +         
Sbjct: 63  TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALD 122

Query: 410 XXXXXENMKHKAQVIVSHPVNPPYYVPLVEI 502
                E++ +  + +    + P Y +P VEI
Sbjct: 123 TSVVAEHVTNPERCLGIRFLYPVYSIPEVEI 153


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 209 LLRGNLNADEQFQ--CVKGTCDLAIAVKDAIFVQECVPENL 325
           LLR   + DE  +  C++  CD+A+ V D  F+ +CV ++L
Sbjct: 806 LLRDTNDTDECMKECCLRDECDVAVMVSDYCFMADCVSDSL 846


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 50  KVGIVGSGLIGRSWAMLFASVGYQVTLFD 136
           +V IVG GL+G   A+ FA  GY+V L++
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193


>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
          Length = 456

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +2

Query: 26  MASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTL 130
           ++S F  ++V ++G+G+IG + A    + GY+VT+
Sbjct: 13  LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47


>SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)
          Length = 210

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 138 TSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNL 34
           TS K +WYP   N    D+P+S LP+I   S + L
Sbjct: 55  TSEKNSWYPNPEN----DIPLSTLPSIQPLSKVKL 85


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 50  KVGIVGSGLIGRSWAMLFASVGYQVTLFDVVE 145
           KVGIVGSG+ G S A L    G +V L++  E
Sbjct: 2   KVGIVGSGIAGLSAAWLLTLRGNEVHLYEKQE 33


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
 Frame = +2

Query: 107  SVGYQVTLFDVVEKQITDAIADIK-VQLKTLEKDGLLRGNLNADE--------------Q 241
            S  Y   +  V  +++ +A+   K  Q   +E D  L+G +NA +              Q
Sbjct: 1981 SAFYNPKIAFVTHRKVFEAVISHKRCQSSVIENDVTLQGGINAGKFTDLGQMTDMQECVQ 2040

Query: 242  FQCVKGTCDLAIAVKDAIFVQECVPENL 325
              C K TCD+A  ++D  +   C+   L
Sbjct: 2041 RCCAKSTCDVAFMLEDECYGVSCISNTL 2068


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 41  KSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEK 148
           KS KV IVGSG+ G   A    S G  VT+ +  E+
Sbjct: 249 KSPKVIIVGSGIAGLMAARQLQSFGIDVTMVEARER 284


>SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)
          Length = 409

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 26/106 (24%), Positives = 51/106 (48%)
 Frame = +2

Query: 53  VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 232
           VG+VG+G++ R      A     + L +  +  I++ ++      K L+ DG +     +
Sbjct: 288 VGVVGAGVVSRGLTGKVAKHEDTMVLAESKKNSISELVS------KALQ-DGRI-----S 335

Query: 233 DEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVD 370
           DE+F+ +    +    +KDAI  +  +  + +L   V  +L N+VD
Sbjct: 336 DEEFRLILQEQERYNTLKDAIRARHGLAPHYDLPNIVDYDLPNIVD 381


>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 251 VKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLD 358
           +K + D+  +V DA  V E + ENL  K K+F  LD
Sbjct: 13  LKISLDVPGSVADADLVIEAIVENLRTKHKLFTALD 48


>SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 323

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 248 CVKGTCDLAIAVKDAIFVQECVPENL 325
           C + TCD+A  +KD  +  EC  + L
Sbjct: 176 CDRDTCDVAFYLKDTCYSVECYADEL 201


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 228 FRFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTF 49
           + FPL      KV + +  S+IAS +  S  S    W P+ A    + L +SP+   P  
Sbjct: 672 YPFPLEPGWGLKVVSASSSSSIASSVPSSMYSGPTPWIPSSA--ARYTLAVSPMLQSPRS 729

Query: 48  S 46
           S
Sbjct: 730 S 730


>SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 353

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 248 CVKGTCDLAIAVKDAIFVQECVPENL 325
           C + TCD+A  +KD  +  EC  + L
Sbjct: 187 CDRDTCDVAFYLKDTCYSVECYADEL 212


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = +2

Query: 65  GSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAI-ADIKVQLKTLEKDGLLRGNLNADEQ 241
           G+G +G S   +    GY+VT++D     I+         +L+ +  D L  G+L+    
Sbjct: 148 GAGYLGSSLVPILLDQGYKVTVYDRFLWGISSLYPCASNPRLQIINGDILDVGHLS---- 203

Query: 242 FQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVD 370
            QC+   CD  I +   +    C  +  +  +   Q   NVVD
Sbjct: 204 -QCI-SECDAVIHLASIVGYPACEKDPQKATEVNEQGTRNVVD 244


>SB_38953| Best HMM Match : 7tm_1 (HMM E-Value=1.4)
          Length = 324

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 16  ACRHGFQV*IGKSWNCWEWTDREIMGY--VVRFSRIPSNFVRC 138
           AC H F   +G S   W+W  R+ +GY  V+R     S   RC
Sbjct: 11  ACHHFFHFFVGASGARWQWL-RQCVGYTSVLRMLVSVSGARRC 52


>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
          Length = 334

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 114 PTEANNIAHDLPISPLPTIPT-FSDLNLEA 28
           PT  + + H  P  PLP IPT  S ++L+A
Sbjct: 82  PTSPSLVYHSYPYKPLPRIPTSLSLVSLQA 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,107
Number of Sequences: 59808
Number of extensions: 329307
Number of successful extensions: 936
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)