Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H06
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    68   4e-12
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    67   8e-12
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    62   2e-10
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    31   0.36 
At1g55980.1 68414.m06421 expressed protein                             31   0.36 
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi...    30   0.83 
At1g50080.1 68414.m05618 hypothetical protein                          28   3.3  
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138...    28   4.4  
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138...    28   4.4  
At5g26250.1 68418.m03131 sugar transporter, putative similar to ...    27   7.7  
At3g52480.1 68416.m05771 expressed protein                             27   7.7  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 44/153 (28%), Positives = 72/153 (47%)
 Frame = +2

Query: 47  EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 226
           + VG+VG+G +G   A L A+ G  V L D     ++ A A I   +K     GL+   +
Sbjct: 5   KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64

Query: 227 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 406
             D+    ++ T +L       I V E + E+ ++KKK+F++LD +   + I        
Sbjct: 65  G-DDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122

Query: 407 XXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIV 505
                    +  +QVI  H +NPP  + LVEI+
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEII 155


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 42/155 (27%), Positives = 74/155 (47%)
 Frame = +2

Query: 41  KSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRG 220
           K +KV I+G GL+G   A       Y V L +V EK +   I  +K  L++  + G +  
Sbjct: 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQ 370

Query: 221 NLNADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXX 400
               ++    +KG+ D   + +D   V E V EN+ LK+++F +L+     + I      
Sbjct: 371 E-KFEKTMSLLKGSLDYE-SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428

Query: 401 XXXXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIV 505
                   E  K + +++ +H  +P + +PL+EIV
Sbjct: 429 TIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIV 463


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 38/153 (24%), Positives = 69/153 (45%)
 Frame = +2

Query: 47  EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 226
           +KV ++G GL+G   A        +V L ++  + +   I  ++  +K+L   G L  + 
Sbjct: 310 KKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLTQD- 368

Query: 227 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 406
            A +     KG  D      D   V E V EN++LK+ +F+ ++ V   + I        
Sbjct: 369 KAGKALSLFKGVLDYT-EFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTSTI 427

Query: 407 XXXXXXENMKHKAQVIVSHPVNPPYYVPLVEIV 505
                 E    K +++ +H  +P + +PL+EIV
Sbjct: 428 DLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIV 460


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 136
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 10  IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 136
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 148 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188


>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein similar to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 334

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 50  KVGIVGSGLIGRSWAMLFASVGYQVTLFD 136
           K+G +G+G++GRS        GY VT+F+
Sbjct: 39  KIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67


>At1g50080.1 68414.m05618 hypothetical protein
          Length = 91

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 189 FNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMTT 19
           FNC L+   AS I      + +     + NN+ H+    P PTI    D  +  + T
Sbjct: 18  FNCVLLCMFASFIRKLAAQSTIYNLWKQRNNVVHNQVSIPAPTIFKLIDREIRNIIT 74


>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 351

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 444 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 322
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 265 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 307


>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 439

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 444 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 322
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 353 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 395


>At5g26250.1 68418.m03131 sugar transporter, putative similar to
           hexose transporter [Lycopersicon esculentum] GI:5734440,
           sugar carrier protein {Ricinus communis} SP|Q41144,
           monosaccharide transporter [Nicotiana tabacum] GI:19885;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 507

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 188 KTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKD 289
           +TL+K   +RG  + DE+++ +   CD+A  VKD
Sbjct: 237 ETLKK---IRGVEDVDEEYESIVHACDIARQVKD 267


>At3g52480.1 68416.m05771 expressed protein
          Length = 209

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 282 TAIAKSQVPFTHWNCSSAFRFPLRSPSF 199
           T I+  +V F+H+N ++ F  P  SP F
Sbjct: 159 TDISDDEVDFSHYNQTTPFSTPCASPPF 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,392,974
Number of Sequences: 28952
Number of extensions: 226139
Number of successful extensions: 779
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)