Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H05
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   4.2  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    24   7.3  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 59  HLTRPGDRTRDLRTAVVCN 3
           H + P D T  LRTA+VC+
Sbjct: 83  HASEPVDETGLLRTAIVCD 101


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 277 VSKQSTLQFNLYIHTYAHACYPLWVRQ 197
           VS  STL+F++Y H        LWV Q
Sbjct: 360 VSIHSTLRFSIYTHPDFKPPASLWVYQ 386


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 135 QGASLSPYRAQIPNSGMILSRKNPISLDPTRGSNPRPQNGS 13
           +GAS S   + I   G+  SR  P ++DP R  +P P+  S
Sbjct: 192 KGAS-SVISSNITRQGIKRSRTLPWAVDPYRYGDPDPKRTS 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,337
Number of Sequences: 5004
Number of extensions: 32674
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)