Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H05
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    28   3.1  
01_06_1174 - 35126903-35127015,35127096-35127160,35127417-351275...    28   3.1  
05_01_0242 + 1804183-1806096                                           27   5.4  
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    27   7.1  
02_04_0104 + 19769744-19769893,19770014-19770252,19771000-197710...    26   9.4  

>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 186 ANYTTHISPSLVPSQM*QGASLSPYRAQIPNSGMILSRKNPISLDPTRGSNPRPQNG 16
           ++Y+ H SP+L  +Q+     L+P   QIP     LS  +  S  P   + PR Q G
Sbjct: 112 SSYSPH-SPTLAQAQL-VAHGLAPPLPQIPTQNFSLSLSSASSNPPPPQAQPRRQLG 166


>01_06_1174 -
           35126903-35127015,35127096-35127160,35127417-35127503,
           35128560-35128731,35128874-35128919
          Length = 160

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 125 LAPCHIWDGTKLGEMW 172
           L PCH+ +G  LG MW
Sbjct: 76  LRPCHVGEGIVLGSMW 91


>05_01_0242 + 1804183-1806096
          Length = 637

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 78 SRKNPISLDPTRGSNPRPQNGS 13
          S +N I  DP+R   PRP  GS
Sbjct: 26 SHRNKIPADPSRTERPRPDPGS 47


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 323 IVHSALFLMSSVIQICFETVYASI*FIHTYICS 225
           I    +F+MS+ +  C+E  +  +  +HT  CS
Sbjct: 204 IAQIGIFIMSTAVAFCWEISHHFVQVVHTRRCS 236


>02_04_0104 +
           19769744-19769893,19770014-19770252,19771000-19771096,
           19771213-19771362,19771450-19771576,19772543-19772655,
           19772736-19772799,19772898-19772991,19773083-19773191,
           19773982-19774080
          Length = 413

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 42  PGSGQVI*GFFYSVSSRSLEFVPDM-ATGSPPVTSGTELS*AKCGWCSSLFHLCLTHRG 215
           P  G +     + V++ S+  + +  +TG P    GTE     C W  S FH  L  RG
Sbjct: 317 PHMGHLAWADAFVVTADSISMLSEACSTGKPVYVIGTEY----CKWKFSAFHKTLRERG 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,466,905
Number of Sequences: 37544
Number of extensions: 224617
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)