Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H05
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25378| Best HMM Match : CNH (HMM E-Value=0.037)                     28   3.1  
SB_49872| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    27   4.1  
SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)                 27   5.4  
SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)                27   7.2  

>SB_25378| Best HMM Match : CNH (HMM E-Value=0.037)
          Length = 346

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 132 GASLSPYRAQIPNSGMILSRKNPISLDPTRGSNPRPQN 19
           G  L P  A +PNSG+IL R +   +  + G + + Q+
Sbjct: 129 GKHLEPTIATLPNSGLILCRDDMSIITDSEGKHTQKQS 166


>SB_49872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 292 PLYKYVSKQSTLQFNLYIHTYAHA--CYPLWVRQR*NSELHHP 170
           PL  Y S  +    N + H YA+A  C+P+W R + +S    P
Sbjct: 25  PLPPYASPYANA--NAHAHAYANALPCFPMWDRMQASSSQGSP 65


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 234 HMLTPVIPYGLGRGEIANYTTHISP 160
           H+LT + P G+ R +   +TT+++P
Sbjct: 259 HILTEISPVGIFRTDAQGFTTYVNP 283


>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 30  SGSIPGSGQVI*GFFYSVSSRSLEFVPDMATGSPPV 137
           S S+  SG V  G F+S   R+L+FV D+   + P+
Sbjct: 124 SYSVDASGAVAKGNFFSEPMRTLDFVTDIPGCNSPL 159


>SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)
          Length = 815

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 135 QGASLSPYRAQI--PNSGMILSRKNPISLDPTRGSNPRPQ 22
           +G  L P R  I  P  G+IL     + LDP  G++ RP+
Sbjct: 704 RGLILDPVRGLILDPLRGLILDPVRGLILDPVAGTDTRPR 743


>SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -1

Query: 219 VIPYGLGRGEIANYTTHISPSLVPSQM*QGASLSPY-RAQIPNSGMILSRKNPISLDPTR 43
           V+  G G G +       +   +P       S+SP  + QI +   I  +  P+   PTR
Sbjct: 308 VVQTGGGLGSLNTDLPFDASGSIPIGHTTFGSVSPSTKRQIAHRVKITPKTVPLGAPPTR 367

Query: 42  GSNPRPQNGSR 10
           G   RP+ G R
Sbjct: 368 GPPTRPRRGLR 378


>SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)
          Length = 401

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  YRVFSTQYHPGVWNLCPIWRQARPLSHL 144
           YR F + Y    WN+C   +++ P +HL
Sbjct: 352 YRGFDSHYKTCHWNVCRYCKKSFPSNHL 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,498
Number of Sequences: 59808
Number of extensions: 255094
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)