Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H05
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    26   8.4  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    26   8.4  

>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 168 ISPSLVPSQM*QGASLSPYRAQIPNSGMILSRKNPISLDPTRGSNPRPQ-NGS 13
           IS   VPS +    + +P  A  P++G++ SRK   S  P+    P+PQ NGS
Sbjct: 358 ISDKPVPSSV----NPAPAPAPTPSAGLVGSRKELFSSKPSGPVLPKPQVNGS 406


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 273 RNSLRFNLIYTYIHMLTPVIP 211
           +N L F+ +YT +HM  P+ P
Sbjct: 178 KNILCFSALYTILHMTIPITP 198


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 125 LAPCHIWDGTKLGEMWVV*FAISPL 199
           + P H+W  T L  MW+   A+ P+
Sbjct: 250 MLPQHLWSYTALNFMWICNSAVHPI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,826,597
Number of Sequences: 27780
Number of extensions: 192933
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)