Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H05
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   2.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   3.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -1

Query: 189 IANYTTHISPSLVPSQM*QGASLSPYRAQIPNSGMILSRKNPISLDPTRGSNPRPQNGS 13
           +A++ +H+S +L  S       + P  A          + +P    P RGS+P  Q+G+
Sbjct: 283 LASHHSHLSSALGRSAC-HSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPHHQHGN 340


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 9   YDCRSEVSGSIPG 47
           Y+C    +GSIPG
Sbjct: 62  YECEGRSAGSIPG 74


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 9   YDCRSEVSGSIPG 47
           Y+C    +GSIPG
Sbjct: 62  YECEGRSAGSIPG 74


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 273 ETYLYNGRH 299
           +TY YNG+H
Sbjct: 121 DTYFYNGKH 129


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 273 ETYLYNGRH 299
           +TY YNG+H
Sbjct: 89  DTYFYNGKH 97


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -1

Query: 123 LSPYRAQIPNSGMILSRKNPISLDPTRGS 37
           LSP+    PN   IL    PI      GS
Sbjct: 47  LSPFNIDTPNRQKILKDGFPIKCGTFLGS 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,205
Number of Sequences: 438
Number of extensions: 2276
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)