Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H05
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ...    28   2.6  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    27   4.5  
At1g19360.1 68414.m02409 expressed protein                             27   6.0  

>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
            bromodomain-containing protein low similarity to
            SP|P51123 Transcription initiation factor TFIID 230 kDa
            subunit {Drosophila melanogaster}; contains Pfam
            profiles: PF00439 bromodomain, PF00240: Ubiquitin family
          Length = 1700

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -1

Query: 234  HMLTPVIPYGLGRGEIANYTTHISPSLVPSQM*QGASLSPYRAQIPNSGMILSRKNPISL 55
            H L P   Y   RGE   +   +S  L+PS     A+ S Y   +P   + + +    S 
Sbjct: 1331 HSLMPA--YSRERGESELHNPSVSGQLLPSTETDQAASSRYTTSVPQPSLSIDKDQAESC 1388

Query: 54   DPTR 43
             P R
Sbjct: 1389 RPHR 1392


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 72  KNPIS-LDPTRGSNPRPQNGS 13
           KN +S + P RG NP+PQ G+
Sbjct: 179 KNALSKITPQRGENPKPQKGA 199


>At1g19360.1 68414.m02409 expressed protein
          Length = 428

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 68  FFLLSIIPEFGICARYGDRLAPCHIWDGTKLGE 166
           F+L   IP   +  R  DRL+   +WD     E
Sbjct: 311 FYLRPTIPSIELLDRVADRLSKAKVWDQAVFNE 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,338,700
Number of Sequences: 28952
Number of extensions: 176760
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)