Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_H03
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 32 0.047
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 28 1.0
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 27 1.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 1.8
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.1
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 4.1
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 5.4
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.1
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 9.4
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 9.4
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 9.4
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 25 9.4
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 32.3 bits (70), Expect = 0.047
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +2
Query: 194 DTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEY 373
D KI W+ V+ YES+ + L G L+ ++ T C I G P+ R+ Y
Sbjct: 66 DIKIMSSEWIPVL-YESWVQGEDLDDGLLVDKHFLPTLFKCRVCLTNI-GQPERSRIENY 123
Query: 374 NTTNNGPDCMKGTKDCAH 427
+ G C T+D H
Sbjct: 124 VLKHGGTFCPDLTRDVTH 141
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 245 FDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRL 364
FDH K G K ++ HC+ + I G +NVR+
Sbjct: 280 FDHSKKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRI 319
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 334 QDCSSDTVCSSEHVLRTDE*ATA*QLHMIKTLIFDHHKPWILGDFCVISTDNFINNGVF 158
Q C S SS+ +L ++ A Q+H + + D ++ + D V S ++F+NN F
Sbjct: 108 QSCKSACENSSQSLLNVEQ-QYAQQVHFWEKIRTDIYREGLRSDAAVKSLNDFVNNVSF 165
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 1.8
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Frame = +2
Query: 62 PEINPEDMTLNERCSRAV-TAFPLESNNECCGVEDTVVNKIVGG--NDTKITQYPWLVVI 232
P +NP D+TL ER + + F ES E V+ +V ++ ++ I ++ +L+
Sbjct: 211 PTLNPSDITLMERVVNTIASCFCGESTPE--RVQLQIVKALLAAITSERTIIRHSFLLTA 268
Query: 233 EYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEYNTTNNGPDCMKGT 412
+++ ++ LLC S + + V T N E++T N GT
Sbjct: 269 VRQTY-NIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLN-HEREFSTINMNKSSSNGT 326
Query: 413 KDCAHPVVTAPIEK 454
D A+ + + + +
Sbjct: 327 PDRANSPIPSQLSE 340
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 189 PPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQTD 13
P I T S +P ++ +SG +T+ +S GGP +T + SGP+ D
Sbjct: 135 PAPINSATASMSPANN---TSGNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPVPHD 190
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 469 WMWNSFFYRSSNNGMCT 419
WMWNSF S NG T
Sbjct: 421 WMWNSFRGASDENGEVT 437
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 345 RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 431
R+ CV ESI ++ T K+P T H+P
Sbjct: 31 RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = -2
Query: 288 ELMSEPPHSSFI*SKLSYSITTSHGYWVIFVSFPPTILLTTVSSTPQH 145
E +S+ S + K+ T+HG W ++ P ++ ++ ++ P++
Sbjct: 469 EKLSQWYKSDTLLGKIDKEADTNHGTWNFLLNLPLSLTISHITPLPEN 516
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -1
Query: 484 VGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQ----DCSSD 317
+G + WN ++Y+ +N +FG ++ +I+ T + S + + SSD
Sbjct: 253 LGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSD 312
Query: 316 TVCSSEHVLR 287
T S+ +LR
Sbjct: 313 TNLESDFLLR 322
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 411 VPFM-QSGPLFVVLYSPKRTFFGVPSI 334
VP++ + G F VLYSP+ T P++
Sbjct: 239 VPYLTEIGQSFAVLYSPELTSLNFPNL 265
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 502 MSALHIVGDVIWMWNSFFY 446
M A +V D W W FF+
Sbjct: 259 MDAHRVVRDYAWYWGDFFF 277
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 346 RSFNQDCSSDTVCSSEHVLRT 284
RSF Q CS++ +CS+E R+
Sbjct: 472 RSFFQKCSAEFLCSNEPNFRS 492
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 241 LIFDHHKPWILGDFCVISTDNFINNGVFDSTTLVVA 134
L+F + KP + CV+ST NF N +F+ + + +
Sbjct: 130 LVFGNLKP----NVCVVSTPNFEFNTIFEKLSTLTS 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,003
Number of Sequences: 5004
Number of extensions: 51976
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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