Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H02
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   4.4  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   5.9  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   5.9  
01_06_0693 - 31280108-31281271                                         28   5.9  

>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 496 TVLLRSSXRCVDCSCPAFERMG 431
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 43  RTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE--QRLTYLTEDIGFN 207
           R   Q G + D   I YGI     +++Y+   S+  +  NE+     T  +ED+G N
Sbjct: 284 RIHRQKGHVEDHLYI-YGIASTYTRWIYHGEQSDAGINENEDHLDEHTSFSEDVGIN 339


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 166 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 279
           E+ + +    IG   Y  Y   + PF       GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318


>01_06_0693 - 31280108-31281271
          Length = 387

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 10  FVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF-----LYNNEEQR 174
           ++ MDT+  ++R  +++G+  D +A+N  +VK   Q ++  +    F     +Y  E   
Sbjct: 196 YMYMDTVSALFRQMLEEGVPPDTRALNV-LVKGYAQSLHLNDALRVFHQMRPVYGCEPDA 254

Query: 175 LTY 183
           LTY
Sbjct: 255 LTY 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,914,745
Number of Sequences: 37544
Number of extensions: 264208
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)