Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H02
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    32   0.30 
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.40 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    31   0.53 
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.70 
At3g62160.1 68416.m06984 transferase family protein low similari...    29   2.1  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   4.9  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    27   6.5  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    27   8.6  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   8.6  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +1

Query: 127 YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY---GNLKHRR--GE 291
           Y + SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y    + K  +  GE
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLKVLSFKSNKLSGE 204

Query: 292 IYYNFYQQLTTRYYFERLTNGLGSIPE 372
           ++ +     T  Y   R  +  GS+P+
Sbjct: 205 LHSSLLSLSTIEYIDLRANSLSGSLPD 231


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 71  TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 166
           T+QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 32  LRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 166
           L F+  + K V  T+QRL + E+ K+    C+ P  P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 411 GIVTSLNRRVPREFRYGTQAVCKT 340
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 408 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 319
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +1

Query: 274 KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 450
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 349  NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVXNYEAIRFLDIFE 513
            +GL +IP  +W +  +TG    +   + P     D      V NYE    L+ F+
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFD 1058


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 184 GRSTSVLHYCKGKCWNSWRNTHTALPLLQF 95
           G+    LH     C  SW N H   P+ +F
Sbjct: 151 GKELKCLHLYHSSCIVSWLNIHNTCPICRF 180


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 494 GSWTFLKRLSYSPY 535
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,070
Number of Sequences: 28952
Number of extensions: 231225
Number of successful extensions: 672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)